LOC111193291


Basic Information

Item Value
gene id LOC111193291
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 6456811 ~ 6457729 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU119325
GTGTTGAATATTAACAAGAAGGGGGTTGTTTCCAAGCAGGTGAGGAGCGGTAATGGGGAGAGAGAAGATTAGGATAAAGAATGGTTGGTTGTTTCTCTTCCCCCTTCCATAACCTCCCTTCAACTCAACCATGAGTGAAGGTTTGGAGAGGGTTGGATAGGAGAGGAGTAAACCTTACCCTTATCCAGGAGCTTAGGAGAGAGGAGGACATTGAATCCAGAGAGGCTGACATTGCAGAGAAGACTATGGGAATCTACACTGTCTGAACAGAGGGACATGGTCCAGGTGATGGACGCTTTGCAGATGTTGATGTTGTGCTGGAAGGCGTGGACGTTCTCGTTCTCTCTGCTTTATGGACAGATTTATGCACTCAACTTGAGCAATCCAAAAGCCTGAAGCGTACATTTGAGGTGTACCAGAAAACCCTGAAGGACCTGGAC
>XR_002650409.1
TTCAACTCAACCATGAGTGAAGGTTTGGAGAGGGTTGGATAGGAGAGGAGTAAACCTTACCCTTATCCAGGAGCTTAGGAGAGAGGAGAGCAGTCTCTGCAGTCGCACCAGAAATCCCTGTATTAAAGTGAGGAGATCAACCTCAGTGGGGGATCAACCCATAAACATGACATTGAATCCAGAGAGGCTGACATTGCAGAGAAGACTATGGGAATCTACACTGTCTGAACAGAGGGACATGGTCCAGGTGATGGACGCTTTGCAGATGTTGATGTTGTGCTGGAAGGCGTGGACGTTCTCGTTCTCTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119325 True 440 lncRNA 0.47 2 6456811 6457729
XR_002650409.1 False 310 lncRNA 0.49 3 6456903 6457611

Neighbor

gene id symbol gene type direction distance location
LOC103045308 LOC108431216,LOC108271758 coding downstream 49789 6277116 ~ 6407022 (-)
stk17a stk17a coding downstream 181501 6227605 ~ 6275310 (-)
impa2 impa2 coding downstream 231211 6211898 ~ 6225600 (-)
LOC103047759 LOC108431241,LOC108271803,LOC107655677 coding downstream 250342 6002319 ~ 6206469 (-)
LOC103042957 ralaa,rala,LOC103042957,LOC107565693,LOC108268083,LOC101477841 coding downstream 546631 5901238 ~ 5910180 (-)
LOC103026452 NA coding upstream 641509 7099238 ~ 7101459 (-)
lancl2 lancl2 coding upstream 878999 7336728 ~ 7398583 (-)
LOC103034175 tgfbr1,tgfbr1b,LOC108441711,LOC107757190,LOC105890151,LOC106590284 coding upstream 972270 7429999 ~ 7514588 (-)
LOC103025816 NA coding upstream 1078249 7535978 ~ 7550381 (-)
reck reck,LOC108441710,LOC106590283,LOC106579676,LOC107655684 coding upstream 1099753 7557482 ~ 7636308 (-)
G88686 NA non-coding downstream 89 6455601 ~ 6456722 (-)
G88678 NA non-coding downstream 68893 6385994 ~ 6387918 (-)
G88618 NA non-coding downstream 469410 5986476 ~ 5987401 (-)
G88617 LOC103043891,LOC108431261,LOC107734313 non-coding downstream 477085 5979088 ~ 5979726 (-)
G88614 NA non-coding downstream 526300 5930011 ~ 5930511 (-)
G88690 NA non-coding upstream 32280 6490009 ~ 6490275 (-)
G88706 NA non-coding upstream 202568 6660297 ~ 6660559 (-)
G88707 NA non-coding upstream 202892 6660621 ~ 6661015 (-)
G88742 NA non-coding upstream 510333 6968062 ~ 6968286 (-)
G88749 NA non-coding upstream 582519 7040248 ~ 7040591 (-)
G88465 NA other downstream 1861486 4595058 ~ 4595325 (-)
G88458 NA other downstream 1890607 4565850 ~ 4566204 (-)
lyrm4 lyrm4 other downstream 2765263 3606430 ~ 3691548 (-)
LOC103033691 LOC108431537,LOC108266640,LOC107600138,LOC107713778,LOC107687503,LOC107683489,LOC107734392 other downstream 3102936 3336557 ~ 3353875 (-)
G88044 pfkp,LOC101472402,LOC102201923,LOC100702375,LOC102790125 other downstream 4169572 2275608 ~ 2287239 (-)
vstm2a vstm2a other upstream 218546 6676275 ~ 6732664 (-)
LOC103026131 LOC108431006 other upstream 645842 7103571 ~ 7215239 (-)
G88779 NA other upstream 659932 7117661 ~ 7118126 (-)
G88789 NA other upstream 783982 7241711 ~ 7242570 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 3326894 9784623 ~ 9854099 (-)

Expression


Co-expression Network