RNA id: TU119325


Basic Information

Item Value
RNA id TU119325
length 440
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id LOC111193291
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 6456811 ~ 6457729 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGTTGAATATTAACAAGAAGGGGGTTGTTTCCAAGCAGGTGAGGAGCGGTAATGGGGAGAGAGAAGATTAGGATAAAGAATGGTTGGTTGTTTCTCTTCCCCCTTCCATAACCTCCCTTCAACTCAACCATGAGTGAAGGTTTGGAGAGGGTTGGATAGGAGAGGAGTAAACCTTACCCTTATCCAGGAGCTTAGGAGAGAGGAGGACATTGAATCCAGAGAGGCTGACATTGCAGAGAAGACTATGGGAATCTACACTGTCTGAACAGAGGGACATGGTCCAGGTGATGGACGCTTTGCAGATGTTGATGTTGTGCTGGAAGGCGTGGACGTTCTCGTTCTCTCTGCTTTATGGACAGATTTATGCACTCAACTTGAGCAATCCAAAAGCCTGAAGCGTACATTTGAGGTGTACCAGAAAACCCTGAAGGACCTGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119322 lncRNA downstream 89 6456489 ~ 6456722 (-) False G88686
TU119320 lncRNA downstream 795 6455601 ~ 6456016 (-) True G88686
TU119312 lncRNA downstream 68893 6385994 ~ 6387918 (-) True G88678
TU119241 lncRNA downstream 469410 5986476 ~ 5987401 (-) True G88618
TU119240 lncRNA downstream 477085 5979088 ~ 5979726 (-) True G88617
TU119330 lncRNA upstream 32280 6490009 ~ 6490275 (-) True G88690
TU119347 lncRNA upstream 202568 6660297 ~ 6660559 (-) True G88706
TU119348 lncRNA upstream 202892 6660621 ~ 6661015 (-) True G88707
TU119354 lncRNA upstream 218546 6676275 ~ 6679778 (-) False vstm2a
TU119355 lncRNA upstream 218636 6676365 ~ 6679778 (-) False vstm2a
XM_022673433.1 mRNA downstream 49789 6277116 ~ 6407022 (-) False LOC103045308
XM_022673431.1 mRNA downstream 49789 6277116 ~ 6407022 (-) False LOC103045308
XM_022673432.1 mRNA downstream 49789 6277116 ~ 6407022 (-) True LOC103045308
XM_022673429.1 mRNA downstream 181501 6227605 ~ 6275310 (-) True stk17a
XM_007238664.3 mRNA downstream 231211 6211898 ~ 6225600 (-) True impa2
XM_007233394.3 mRNA upstream 218815 6676544 ~ 6732664 (-) True vstm2a
XM_007233446.2 mRNA upstream 641509 7099238 ~ 7101459 (-) True LOC103026452
XM_022673435.1 mRNA upstream 645842 7103571 ~ 7215239 (-) True LOC103026131
XM_007233389.3 mRNA upstream 878999 7336728 ~ 7398583 (-) True lancl2
XM_007233388.3 mRNA upstream 972270 7429999 ~ 7514588 (-) True LOC103034175
TU119041 other downstream 1861486 4595058 ~ 4595325 (-) True G88465
TU119034 other downstream 1890607 4565850 ~ 4566204 (-) True G88458
TU118917 other downstream 2765347 3606470 ~ 3691464 (-) False lyrm4
TU118512 other downstream 4169572 2275608 ~ 2287239 (-) False G88044
TU118200 other downstream 5491734 960006 ~ 965077 (-) True G87802
TU119427 other upstream 659932 7117661 ~ 7118126 (-) True G88779
TU119448 other upstream 783982 7241711 ~ 7242570 (-) True G88789
TU120441 other upstream 3345042 9802771 ~ 9854074 (-) False LOC103029706
TU120626 other upstream 3437096 9894825 ~ 9901700 (-) True G89690
TU120653 other upstream 3503553 9961282 ~ 9964606 (-) True G89708

Expression Profile