RNA id: TU119330


Basic Information

Item Value
RNA id TU119330
length 267
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G88690
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 6490009 ~ 6490275 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccttcaggagtgagtgcaggtaggaaggagctgttctgtcatcaccttgtaggcgattgtaagagttttgaatttgatgcgagcatcaactggtagccagtggagctcaatgagcagcggggtgacatgtgcccgttttggttggttgaagaccagacgtgctgctgcattctggatcatttggagtggttttactacgcaggccgggaggccagttagcagggcattgcagtagtcgaggcgtgagatgacgactgcttgtaccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119325 lncRNA downstream 32280 6456811 ~ 6457729 (-) True LOC111193291
XR_002650409.1 lncRNA downstream 32398 6456903 ~ 6457611 (-) False LOC111193291
TU119322 lncRNA downstream 33287 6456489 ~ 6456722 (-) False G88686
TU119320 lncRNA downstream 33993 6455601 ~ 6456016 (-) True G88686
TU119312 lncRNA downstream 102091 6385994 ~ 6387918 (-) True G88678
TU119347 lncRNA upstream 170022 6660297 ~ 6660559 (-) True G88706
TU119348 lncRNA upstream 170346 6660621 ~ 6661015 (-) True G88707
TU119354 lncRNA upstream 186000 6676275 ~ 6679778 (-) False vstm2a
TU119355 lncRNA upstream 186090 6676365 ~ 6679778 (-) False vstm2a
TU119387 lncRNA upstream 477787 6968062 ~ 6968286 (-) True G88742
XM_022673433.1 mRNA downstream 82987 6277116 ~ 6407022 (-) False LOC103045308
XM_022673431.1 mRNA downstream 82987 6277116 ~ 6407022 (-) False LOC103045308
XM_022673432.1 mRNA downstream 82987 6277116 ~ 6407022 (-) True LOC103045308
XM_022673429.1 mRNA downstream 214699 6227605 ~ 6275310 (-) True stk17a
XM_007238664.3 mRNA downstream 264409 6211898 ~ 6225600 (-) True impa2
XM_007233394.3 mRNA upstream 186269 6676544 ~ 6732664 (-) True vstm2a
XM_007233446.2 mRNA upstream 608963 7099238 ~ 7101459 (-) True LOC103026452
XM_022673435.1 mRNA upstream 613296 7103571 ~ 7215239 (-) True LOC103026131
XM_007233389.3 mRNA upstream 846453 7336728 ~ 7398583 (-) True lancl2
XM_007233388.3 mRNA upstream 939724 7429999 ~ 7514588 (-) True LOC103034175
TU119041 other downstream 1894684 4595058 ~ 4595325 (-) True G88465
TU119034 other downstream 1923805 4565850 ~ 4566204 (-) True G88458
TU118917 other downstream 2798545 3606470 ~ 3691464 (-) False lyrm4
TU118512 other downstream 4202770 2275608 ~ 2287239 (-) False G88044
TU118200 other downstream 5524932 960006 ~ 965077 (-) True G87802
TU119427 other upstream 627386 7117661 ~ 7118126 (-) True G88779
TU119448 other upstream 751436 7241711 ~ 7242570 (-) True G88789
TU120441 other upstream 3312496 9802771 ~ 9854074 (-) False LOC103029706
TU120626 other upstream 3404550 9894825 ~ 9901700 (-) True G89690
TU120653 other upstream 3471007 9961282 ~ 9964606 (-) True G89708

Expression Profile