RNA id: XM_007233394.3


Basic Information

Item Value
RNA id XM_007233394.3
length 4703
RNA type mRNA
GC content 0.40
exon number 5
gene id vstm2a
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 6676275 ~ 6732664 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTATTACATCCATCACAGCAGCAGCTCGcagacgcagcagcagcagcagtccaGCCAGCATCCAGTATCCAGCCCACCTCGCCGCGTGCCTGCTACTATAGCACCTGTGCGCAACTTTCACTGGAGTCTCTCTTTCATCTCCTCGCAGCGTGTTTTTTGTGTGCGTGATTCTCTGTGCGTGAGCGCGCGTGCAACATTTACAGCATGCCCCGCGTTCGGCAATTGCGCTCCAATCGCACTTGCGCGGCTTTGATTTAAATGCGTTGAATCGTCTCTTTTTTATCAGGGGGGGTTCCTTTTCTTTTGGAAAGACGTCGTTTCTCAGCTAATGCGAGATCCGCGCGCTCTGTGGAACGATGTGGACCTTACACGACAGTGTtggatttgttttcttttcctgtTTGTCCATCCAGATCGGATTTTCTCTGCAAGGAAAGTTTACGGATCTGCCTTCCAACATTACTGCGAGAGAGGGACAAAACATTGAAATGGCCTGTGCCTTTCAAAGTGGGACATCTTCTGTTTACTTGGAGATTCAGTGGTGGTTCATACGAGCTCCAGAGGAACCCAGTACtagcgaggaggaggaggatgaggaagaaaCTGAGATGGAGCTGGTACCAGAGCCTGACCCGGACGATGAAGGAACTAAAATAAGTACAGTCAAGGTCCAAGGCAACGACATTTCCCACAAACTGCAGATCTCACGGGTGAGCAAGAGCGACGAGGGGCTGTACGAGTGCCGAGTCACCGACGCCAACTACGGAGAACTTAAGGAGTACAAAGCCCAGGCCTACCTGAAGGTCAACGCCACAGTCCGCAGAGGACTCATCAAGAAGACGTCCCCCCTGCACCTGACGGATAAGAAGCCCCGGAAGAGCTCGGCTCTGGGCCAGGACAGCAACGGCATGAGTTCAGACCAGCGTTCCCAGTCCACCTCTACCTCCCAGTCATCACAGTCTAAAACAGTGAAACACAGCGCAGGGTCAGGTACCAGGATATCTACGAGCTATGGACTTGCTATCCTGCTTTTCGCTAGCAACTGCGTGAGGGGAGCTTTGCTATAGTCGGtgactcttctttttttttgtttccagttCCAACAGTCCTTCTTAAAGccaagagaaaagaaaaaaaataatcacttgCTATTTCCATGGAGTGGATGGCACAGTTGTCTCTTACATAAAACCAATATTTGCACCCCAAATGTTATAATTATCTTCACCacagtcactttttttttcttttttttttttcaaaagccgTGGAGGATAAGACTGTCTTCTTggacttatgtttttttttttttgtgctccaCATGATAAAAACACAACACGGACGCAAGGAATTATGGGCTACCTTTCACCCATacgttgttattattattattattattattattattattattattattattattattattattattattatttttgttgtatttttatttttttttctgtttatattcaGCTGTGAATTTAATACGACATGCTCTAAAGTTCGGGAAGaatttatatttgtgtaatatataaatatatacatacagatgCATATAtaatgatttgatttgaaacCTTCTTGGACTCTGTACAGCTTGCATTCATTCTGTAATACTATGTGTGCAAGGacactgaagaaaaacatgagCATTGCAGCACTGGcatttaagtaaatatattgTGGCTGGATAAGTAAATGATGAGTTCTGCTTAACTGTTTGATGTTCTAAGCTGTTAAAATCTGCTTTGGGGTTCTCTTTGAGGTTCTTTATTTGATGCGGACTGTCCTTCTTGCTAAAATGCACATGCCATtatctgttgttgttgttgttgtaggtaacttttggtttgtttcgctTCTCTCTGATTtggtttgattttgtttttagttttcattTGGCTTAATAAATGTGAGCTTATTTCTGTTATCCCTCTGTTAGTCTGTTGTTGTGTGTTCGAGGAAAACAGAACTGTTTCCACACATCATGTGCCATAACCGTGCCTACTTAGCATGTCTAAGAAACAATGCCAGGACATGTACTAATTAGCCTACTGAGCGCTAAATTGCACACAACAATGCCATTTAAGCGCTCAATAAATACCAACCTCTTTCTTCATTCTATGAGAGGGGATTTGTTTAGCCGGTGGCCCTCCGTATCGCTTACAATCATATAAAATGGGAGATTCTTAAACACATTTAGTGCTATTTTCTCTTATTTCCACCATCTCGAGTGCTTCCTTTTGATCTTCAGCACATATTCTCATTTCTGCAAAGTCTGGTGACCGCCTGCTTCAAAATGCACTACATTTGATCGCTGCGTTTTCTCTGTCCAGACAggttttattacataattttttattttttctcaatttGTCGAGTATCTACTTCTGTCACTTAAAACCACAGCCAACAAAAAGACAGACACTAGGAAAATATTTGATATAATCTCTGCTACTGAAAAACCTCACAAACAGCAATTGAAAGATGAGTCCGAGATAAGGACTTTAGTAGAAATACTGTAGGAACAGAAACTCAATAGAACTTAATAGAAATTACACTttaatgtactgtactataGAAAAATGCTTGTTAAACATCAGGTTCCAAATACGCCATTCAACTCAAAATAAGATAAAGTAAAGACTACAGAACATTTTTGCGTTAACTCAactttacattaatttaaagaatatatttccTTGTTGTTCCATATCTCTGTTAGctaaacaatacatattgagTTGAGCCTTAAAAGCATTACTAAATATTCTATAGATGACATTGGTTAAAAACTTTGCAGCATTCGAAATGTATTTTGcacttttctcttttcctgTTATCTGTTTTCTCCCATCTACCAGTTACAACCTTCCCCATAATATGATGTTCCCAGACTGGGAGACTTTAGCCAGTGAAACTTATATGGTCTAGCACttagactgtagggccactCGAGAGCTGGGAAACTAACTGcactacatacaaacaaaaGCAGTTTTGAGTAAATTTACCCTTCTGTTCTTTTTGGAAAAGAGTCTTACAGCTCTAGTgtggcacaactgtctaactgcTTTCTTGTAAAGAGACAGGAGATTATTCGTTAATCCCATCGACAGCACAGCCATACATTTTCAGGAATATGAGAAAAAGGAAGGCCCTCTACTATGTGattgttatatactgtatgtttttcaaCTGCAGCTCATTTACTAATGCTTTTAAGGGTCAATTCAAGTTGTAATGTGGGCCAACTGGACGaagtttttcttatttatttattttataaaatcattttaggGTGGCTTGCCTTAAGTTCTCTATAGTGTGCCCACAATATCTTGAGCCAAGTTCTAATCAAATCACCAAAATTGTCGTAGAATGAAACTCCTTAGCCAAGTTCCATTTTTGATTGTTGGCTTGGACATGTAATCTATACAGTCCTCACAGCATGTGTCCAATTCTATACCATATTTTCCACCTCAATCAAATCTCGATTTTTAAGGAACCAAATGTGGTTCTTGTGTGGAATTGCTCCAAAGAACACGTCAGGAACATTTGAAAAAGTTTAAAACGTAAAGAAGCTCTGATggttaatcagaaaaaaaaaaggctagtgTGCAGTCATAAATTAACAAGCTGAAAACAAATCATTAAGACTAGCTGACGCCTCGGAACAAACTCCATAATCACATCTGAATGTGACCTTTCCAACAGCCATCATTATGTGGTGTAGTCTATGTGAGCAGAGTCTTTCATCTGGCGAGGGAACACAGATCCGTCTAGCCATTGTTTCAAGTTAGTCAACAGCAGCACTCCaagccatttttttattattatatgtatcctgtaaataaacatgaaacacactCTGAATTGGTCAGGATCACCGTGTATAAATTCTCCTTTGAAATAGTTGCGTTGACTTTGTTATGGACCAATAGCTCACTGATAAACACGCCAATTCTCAATTGAACAAGAAAGTCAGGTATTTTGAATGTGGTTCAGACCTGTACATCTGGTGCCAACATCTGTGTACTGTCTGTGTAAATGTCACTGTAATTTAAACAAGCAGCATgattctcttcttttcttttctccaaaacactaaaatgtgttttggctACAGTGTTGTCAATGGTTTATGGATATGTTTGCTGCAGAGACTTCACATCTTCTCCATAATCTCTGGGATTTCATGTCTCGGCAACACCACCCCCACCATACCGTTTTACTATAGAAAAAAAACGCACAGCGGCAACTGAGCACTGGAAATTCTATGGATCGGAGTTTCCTAACGGGAGATTCCTAATGGATTTGCGGATATACCGGTTTGGATCACAGTCAGCTTGAGAGGTGAACTCGGCATCTTACGAACTACAGAATCTGAACCCAGCACTTTACAGACAACACGACATTTCAGCATCTGGAAATCTCATGGATATTCTCTTTctgtcaaaaacaaaaacaaaaaaaaaagaaaaaaaggaaagaaaagagaataaaagaagaTCTAAATTTAATCCTCCTGATTTGGGAATTCTCTGCTGACTCGGGAATTCTTTGCCGCGAGTCAAAACGGACTGCCTGCTGAACTGTAAAGATTTCATGAGGTTTTCATTGACGCTTTGTAGAGCAATGTGGCAGCTTGTACTACAGTgtcaataaaagaaatgataTGTAATGAACCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119348 lncRNA downstream 15529 6660621 ~ 6661015 (-) True G88707
TU119347 lncRNA downstream 15985 6660297 ~ 6660559 (-) True G88706
TU119330 lncRNA downstream 186269 6490009 ~ 6490275 (-) True G88690
TU119325 lncRNA downstream 218815 6456811 ~ 6457729 (-) True LOC111193291
XR_002650409.1 lncRNA downstream 218933 6456903 ~ 6457611 (-) False LOC111193291
TU119387 lncRNA upstream 235398 6968062 ~ 6968286 (-) True G88742
TU119394 lncRNA upstream 307584 7040248 ~ 7040591 (-) True G88749
TU119429 lncRNA upstream 399099 7131763 ~ 7148969 (-) False G88780
TU119428 lncRNA upstream 413910 7146574 ~ 7148969 (-) True G88780
TU119431 lncRNA upstream 442710 7175374 ~ 7177614 (-) True G88781
XM_022673433.1 mRNA downstream 269522 6277116 ~ 6407022 (-) False LOC103045308
XM_022673431.1 mRNA downstream 269522 6277116 ~ 6407022 (-) False LOC103045308
XM_022673432.1 mRNA downstream 269522 6277116 ~ 6407022 (-) True LOC103045308
XM_022673429.1 mRNA downstream 401234 6227605 ~ 6275310 (-) True stk17a
XM_007238664.3 mRNA downstream 450944 6211898 ~ 6225600 (-) True impa2
XM_007233446.2 mRNA upstream 366574 7099238 ~ 7101459 (-) True LOC103026452
XM_022673435.1 mRNA upstream 370907 7103571 ~ 7215239 (-) True LOC103026131
XM_007233389.3 mRNA upstream 604064 7336728 ~ 7398583 (-) True lancl2
XM_007233388.3 mRNA upstream 697335 7429999 ~ 7514588 (-) True LOC103034175
XM_007233444.3 mRNA upstream 803314 7535978 ~ 7550381 (-) True LOC103025816
TU119041 other downstream 2081219 4595058 ~ 4595325 (-) True G88465
TU119034 other downstream 2110340 4565850 ~ 4566204 (-) True G88458
TU118917 other downstream 2985080 3606470 ~ 3691464 (-) False lyrm4
TU118512 other downstream 4389305 2275608 ~ 2287239 (-) False G88044
TU118200 other downstream 5711467 960006 ~ 965077 (-) True G87802
TU119427 other upstream 384997 7117661 ~ 7118126 (-) True G88779
TU119448 other upstream 509047 7241711 ~ 7242570 (-) True G88789
TU120441 other upstream 3070107 9802771 ~ 9854074 (-) False LOC103029706
TU120626 other upstream 3162161 9894825 ~ 9901700 (-) True G89690
TU120653 other upstream 3228618 9961282 ~ 9964606 (-) True G89708

Expression Profile