RNA id: TU119428


Basic Information

Item Value
RNA id TU119428
length 235
lncRNA type intronic
GC content 0.06
exon number 2
gene id G88780
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7131763 ~ 7148969 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgtaaattggggagaaaatggggaaaaaattagaaataaaattataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaatttttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119394 lncRNA downstream 105983 7040248 ~ 7040591 (-) True G88749
TU119387 lncRNA downstream 178288 6968062 ~ 6968286 (-) True G88742
TU119354 lncRNA downstream 466796 6676275 ~ 6679778 (-) False vstm2a
TU119355 lncRNA downstream 466796 6676365 ~ 6679778 (-) False vstm2a
TU119348 lncRNA downstream 485559 6660621 ~ 6661015 (-) True G88707
TU119431 lncRNA upstream 26405 7175374 ~ 7177614 (-) True G88781
TU119434 lncRNA upstream 26405 7175374 ~ 7177614 (-) False G88781
TU119423 lncRNA upstream 60779 7209748 ~ 7214417 (-) False LOC103026131
TU119491 lncRNA upstream 176496 7325465 ~ 7382097 (-) True G88824
TU119500 lncRNA upstream 266089 7415058 ~ 7415485 (-) True G88833
XM_007233446.2 mRNA downstream 45115 7099238 ~ 7101459 (-) True LOC103026452
XM_007233394.3 mRNA downstream 413910 6676544 ~ 6732664 (-) True vstm2a
XM_022673433.1 mRNA downstream 739552 6277116 ~ 6407022 (-) False LOC103045308
XM_007233389.3 mRNA upstream 187759 7336728 ~ 7398583 (-) True lancl2
XM_007233388.3 mRNA upstream 281030 7429999 ~ 7514588 (-) True LOC103034175
XM_007233444.3 mRNA upstream 387009 7535978 ~ 7550381 (-) True LOC103025816
XM_007233387.3 mRNA upstream 408513 7557482 ~ 7636308 (-) True reck
XM_022673434.1 mRNA upstream 494087 7643056 ~ 7698012 (-) True LOC103025511
TU119427 other downstream 28448 7117661 ~ 7118126 (-) True G88779
TU119041 other downstream 2551249 4595058 ~ 4595325 (-) True G88465
TU119034 other downstream 2580370 4565850 ~ 4566204 (-) True G88458
TU118917 other downstream 3455110 3606470 ~ 3691464 (-) False lyrm4
TU118512 other downstream 4859335 2275608 ~ 2287239 (-) False G88044
TU119448 other upstream 92742 7241711 ~ 7242570 (-) True G88789
TU120441 other upstream 2653802 9802771 ~ 9854074 (-) False LOC103029706
TU120626 other upstream 2745856 9894825 ~ 9901700 (-) True G89690
TU120653 other upstream 2812313 9961282 ~ 9964606 (-) True G89708
TU120687 other upstream 2890588 10039557 ~ 10042853 (-) False LOC103025178

Expression Profile