RNA id: XM_022673433.1


Basic Information

Item Value
RNA id XM_022673433.1
length 7890
RNA type mRNA
GC content 0.47
exon number 27
gene id LOC103045308
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 6277116 ~ 6407022 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGATGTTGATGGAGCCGCGGCTGGTGAGCGTCGAGGAGCCGGCAGGAGCGCGCGGGTGAAGATGGGGGTGATGGAGGCGCAGAGCCGCGGATAGGATGGACGCTCGTTTGtggggattattattattattatgattcaCAGGCAGGTGCTGTTCTCTCAGAACCTGTACCAGAACCGGTTTCTGGGACTGGCCGCCATGGCCTCTCCATCGCGGAGCTCCCAGAACCGGCGCCGGTGCAAGGATGGGTCACGCTTCAGCTATGCGGCCGGGCCATTCCCACCCAACCACGCCCTAGATCCCCTATCCCTCCCACGGTCCACCAGTGACACAGACCTGGTGTCCTGCCACAGCCGCTCCACCCTCACCGTCAGCACCTCGCTCTACTGCATCGGCCAGTCCCAGGACATTCTCATCTGCTGGGACATCAAAGAGGAAGTGGATGCTGGAGACTGGATCGGGATGTACCTGATTGATGAGGTTCTTTCAGAGAACTTTCTGGACTACAAGAACCGTGGGGTGAACGGATCACATAAAGGGCAGATTGTGTGGAAGATCGATGCCAGCTCATGCTTTGTAGAGTcTGAAACCAAGATCTGTTTCAAGTATTATCATGGAGTGAGTGGAGCGCTGAGAGCCACCACACCCTGTGTAACAGTGAAGAACACGTCTGCTACCGTGTTGAAGCCCGTAGTGAGTCAGGAGGTCACTCAGAGTCTGGGGAACAGGCGGCTCATCAGCTTCTCCCTGTCAGATATCCAGGCAATGGGTCTGAAGAAGGGAATGTTCTTCAACCCTGATCCATATTTGAAGATCGCCATCCAGCCTGGAAAGCACAGCATCTTCCCTGCTCTTCCCCACCACGGCCAAGAGAAGAGATCCAGCATCATCTGCAACACCATCAACCCTGTCTGGAAGAGAGAGAGGTTTAACTTTGTGTCCCTGCCCACGGATGTGCTGGAGATCGAGGTGAAAGACAAGTTTGCCAAGAGCAGGCCCATCATCAAACGCTTTCTGGGCAAGCTGAGTGTGCCTGTGCAGAGGCTGCTGGAGAAGCACGCTATCGGCGATCGTGTGGTGAGCTATGCTCTGGGCCGCAGGCTGCCAACGGATCATGTCAGTGGACAGCTGCAGTTTCGGTTCGAGATAACATCCTCCATTCATCCAGATGATGAGGAGGTGTCTGCCAATGCAGAGTCAGACTGCATAGTGGCTCCTGAACTGCAGCAGGTGGTGGAAGAGTTGGACGTTGACCCAGTAGcggcagcaacagcagcagcagtagtagcttCTGACTTGGCTGCAGAGGACACAGCGATAATGGGGCCAGTTGAACCTGAGCACCTGGAAGAAAGTTCTTCGGAAGTGGTTGCAGGATCACAGGATTCTGCATTTATTGCATCTTCTGCTAAGCCTAATACCCATTCCCCTGATGATCTTCAGTCTGAGCTGGCAGGCTCACAGGAAGATACTGGTGAGACAGAGGTGGCACCTGAGGAAGTAGTGGAAAGCAGGGTATGTGAAGAGATGCCCAACACAGTAGTAGAGCAATCGACTGGGAATCAAGAGCAGAACCTTGAGGAAACAGAATCTCAGGAACTGGAGGAGGTGCAGCAGGAAGGGCAGCAGGTAGCTGATGTTGATGGTGATGTAGAAGTTCTGGAGACTTGTCCGGATGAACCTGCTGAGGGTTTAGCTACTACAGGAGAAGCCGAAGCTACTGGGGAGGAAGTAGAAGTGCAAGAAGCACAAGAAGCGCAAGAAGGCCAAGAAGTGGAAGGAGCCACTGGTTTGGAGAATAATGAAGCAAGAAACGAAGGAGACAGCGATGGTACAGAAGAGCCATGTTCACCAAGAATGAGGCGCATGCTGAAACGCAAGGCTATGATGCGTCGGCCCTGCTCCCTTCCCGTGTCTGAGCTTGAGACGGTCATTGCTTCATCTTGTGCCGAACCAGAAACCCCTCGCTCACATTACATCCGCATCCACCGCTTGCTGCACAGCTTGCCTTCCGCCCAGCAGCGGTTCAACAGCCAGGATGATGAAGAAGCTCTCGATCTGGAGACTTCTGAAGAGCTCACTCTGAAACCTGCCCCTGACAAAGAGGGGGACGTAGATGAAAATGAAGACGACGCATCTGAGGCCCAGTCTCCATCCATAGTTCCAGAATGCCCTGGACCGTGTTGTAGAAGGACCTTACCCAGAAGCCTCTCTATCGAACGGTTATCTGAGCTCAACCAGCTGTTAGACGGTGAGACCCCCTCGCCCCGAACCCCACGCTGCCCGGACAGTGAGGATGGGGAGCTGGATAGTGGCAGAGGGGGTCTAAGAGGGCCCAGAGAGAGCGAATGCGAACTGTGTGACACTTCATGCTATAGTACCTCCTGTTACAGCACGTCCTGCTACAGCACGTCCTGTTACAGCAACTCCTGCATCGAGGGGCGCAACCGTTTCTGCAGCCACACACGCCTCTCGTCTGTGGACAGCACACGCCTCTCAGAGAGCACCGTCTTCTCCTctcaggaagaggaagaggaggaggagaacagcGCGTTTGAGTCGGCGCCAGATTCCCAGAGCCCGGAAGCGAGGGAGCCAGGAGACAGTTCAGCCCCTTggagggaagagcaggctgagGGGGGTCACAGAAACGGAGAGCAGGGGGATCAGTCTCCAGTAGCTGGCCCCAGCCTGAGGGCTCCagaCTGGGAGGCACGGGTAGACAGTCATGGGCGTGTGTTCTATGTGGACCATGTGAACCGCACCACCACATGGCAGAGGCCCAGCCATGCACCTAAATGCCCCGGCATGCACAGATCCAACTCCATCCAGCAGATGGAGCAACTCAACAGAAGGTATCAGAATGTTCAGAGGACCATGGCCACTGAGGATGACTCCGGTGGCCGAAGGCCTgagggcagcagcagcagcaacaacacagagacagagactgaCCTCCCTCCTCAGCCGGCCGATGTGAGGCGAGACGGCCCCTCCTCACCAGTTAGCAGTCAGAAAGTTACTGTTCTGCTGCAGTGCCCAGCGGTTAAGTTTGTCACCCATCCTGAATTCTTCACTGTTCTCCATGCTAACTACggtgcATACCGGATGTTTACCAACAGCACCTGTCTAAAGCACATGATTCTGAAAATCCGAAGAGATGCGCGCAACTTCGAGCGATACCAGCATAACCGCGACCTCGTCACTTTCCTCAATAAGTTTGCGGACACCCAGCTGGAGCTGCCCAGGGGCTGGGAGATCAAAACTGATCCACAGGGCAAGTCATTCTTTGTGGACCACAACAGTCGAGCCACCACCTTCATTGATCCCAGAATTCCTTTCCAGAATGGCCGTCTGCCCAACCACCTCACACACAGGCAACATCTACAGAGACTACGCAGCTACAGCGCTGGAGAGGCGTCTGATGTATCTCGCAGTAGAGGCGCATCTCTCATGGCCAGACCTGGAAACAGCCTGGTAGCAGCCATCAGGAGCCAGTACCAGCCTGATTCAGTGCCCTTAGCGTATAATGAAAAGATTGTGGCGTTCCTCCGGCAGCCCAACATCCTGGAGATGCTGCAGGAGAGGCAGCCTAGTTTGGCCCGTAATCACACACTCAGGGAGAAGATCCATTACATCAGGACTGAAGGGCCACAGGGTGTGGAGAAGCTGTCCTGTGACGCAGACGTTGTCATGCTGTTAAGCCTGTTCGAAGAGGAGATCATGTCGTACATCCCCACCCACCCCTTCCACCCCAGCCTCAGCTTCTCCCCACGATGTTCTCCTGGATCCTCACCACAGAACTCACCAGGACTGCAGAGAGCCAGAGCGCCTGCCCCATACCGCAGAGACTTTGAAGCCAAACTGCGCAATTTTTACAGGAAGCTCGAAGCCAAGGGCTATGGCCAGGGGCCAGGAAAAATcaaGCTAATCGTCAGAAGAGAACATCTGCTGGAAGGCACTTTTAACCAGGTGATGGCCTACTCGCGCAAAGAGCTCCAGAGGAACAAGCTCTACATTACGTTTGTGGGAGAAGAAGGtCTGGACTACAGTGGGCcttcgcgggagttcttcttccTGCTGTCTCAGGAGCTGTTTAACCCTTACTACGGCCTGTTCGAATACTCAGCCAACGACACCTACACTGTTCAGATTAGCCCCATGTCCGCCTTTGTAGAGAACCATTTAGAATGGTTCAGGTTTAGTGGGCGCATTCTGGGCCTGGCGCTGATTCATCAGTACCTGCTGGATGCTTTCTTCACTCGTCCGTTCTACAAAGCCCTGCTCCGACTGGCGACTGATCTGAGTGATTTAGAATATCTGGATGAGGAGTTCCACCAGAGTCTGCAGTGGATGAAGGATAATGACATTACAGACATTCTGGATCTGACCTTCACTGTTAATGAGGAAGTGTTTGGACAGGTAACAGAGAGGGAGCTGAAGTCAGGAGGATCCAACATCCAGGTGACAGAGAAGAATAAGAAGGAGTACATTGAAAGAATGGCCAAGTGGAGGGTGGAGAGAGGGGTGGTGCAGCAGACAGAAGCGCTGGTCCGGGGTTTCTATGAGGTGGTGGACTCACGTCTGGTGTCAGTTTTTGATGCTCGAGAGCTGGAGCTGGTCATTGCAGGGACAGCAGAAATAGATCTGATTGACTGGAGGTCCAACACAGAGTATAGAGGAGGGTTTCATGATGGACACGTAGTGATCCGGTGGTTCTGGATGGCGGTGGAGCGTTTTAATAACGAGCAGAGGCTGAGATTGCTGCAGTTTGTGACGGGCACCTCCAGTGTTCCCTATGAAGGCTTTGCAGCTCTGCGTGGGAGCAATGGTCTGCGCCGCTTCTGCATCGAGAAGTGGGGGAAGATCACCTCACTACCCAGGGCCCACACATGCTTCAACCGTCTGGATTTGCCTCCATATCCTTCCTACACGATGCTGTATGAGAAGCTACTGATCGCTGTGGAGGAGACCAGCACTTTTGGCCTGGAGTAGAGACTATATTTTCTAAacttactttaatttaaatttcagtGACTCTGTCCTACAGAGACTGCTATTTTATACTGAATTGCATCTGAGGATTAATTTGAGAGtatgtgaatttttatttgagATTAATTGAAACTGCATGAGTATATTGTACATATTGTACTACTGTGGGGTCGGGGAGGTGTAGTTAAACCTGCGTCCAGCCTACTGACTGTTCCTCTGCTACTGTTCATCTGCAGAGCCATTGTTACTAAAGAGGCATTGCTCATTTTCCTGATATACTGTTATAGTGCATGGGGGACAAAGCCCACCTGACAAGAGCTTCACCAATGGCCTGCAGCTTCATTAAGACAAAACATGACACAAATTATTTACAtacatgtttgttttatagCCAAAACCCTGTGAAGATTCATTCTTATAGTTTATTCTTCTTGTATGTTTTCAAAGAAGAGTTTAAAAAATCACCCGTGGCCAACGTTAAAGATCGTTCAGATTGTTTGCAGAAGTTGCTCACTCATATTCTTCTACCACGGGTAGATCACTGTGACCTTAATAATGATCAAAGCTCAATGGATGACTGCCTTGAATTGTGAAAAACAAGGCTAGACATTTTAGTTTAATCAGTTAAAGCAGCAGTCagtaatttttttctattaaattgaAAGCAAAAAGTATTTCTGAGTGGGCATGGGACAAATATTTGAATGAATGGCTAACACCtggcttttttaagtaaattcaacttatttgGGATCGGAATAAATTACTGGCTCTctgaaagctgcgggagaacaGAGGTAGGCTTTTCAACAAAGGtcagtactctttatcatgttttactatacCAAAAGTCCactttacaccagagttctgtagagagctgtatttttgCCTGAGTGAAAACACTAAAGAACAGAAGTGATGAGGCTCCTGCTCCTGAAACTGTGTCGTCTTAGTGTGATATAAGTAGGAAGTTTAAGAGAAGGCAGTTGAGCCAGGTGATGTAAGCGATTTTACAGTAGGCCCAGATTAGCAACGTAATTCACCTCACAGTGCTCTGCAGCCTGAGCCTGTACTCCCAGCTCTAAAATAACACTGTAGATGCTTtcactgctgctgttgttggagAGAGGTCAGGGATGCCCATCAGAAGATACACGGTGGAGGGCATGACGTTGAGCTTTGATTTGTCCCCACAATTCTGTGTCAAATGAGAAGACCTGTTTCTCTGCTTCTTCTTTAGCTTGTCATTTGTTGCCTTTACCCTGAAGATCACTGCACAGATCACCACAAACACAAAGGAAtgccattatatttatatatgtatatatatataccatctTTGTCATACAAAAATTGTGTATCTGGAAAATggtaacattacaataaaaggAAAATCCTTCTTTCTTGACTTTCAGTGGAAAtcagtgtttaaatattttattccaagtcattttgctTTTGGAGCTTTTCTATTGGATACTTTTCTTTTGCATTCGTCCTGAAACTGTGCTACAATATAAAGAAGAGTTATATAAGAGCATAATATAAATTTGGCTGATGTCCTTTATACTGTTTTAGAATTGTGATGAATCATAATGAAATACAATGTTTTagcaccaatagaaatgctccaaaatgcaACATGTCTTAAATATGTCTGCACTGACTTCAGTTGTTTAATTTCTTTCTGCTGTAAAATTGCTATTTTGGAGATTAGAGATTTTTGTATgatagtgttgtgtgtatatatagcatTAACCATTCATAGTTAATTAAAGCAATATTCATTACTGATGCTACACTATTATATTAACCCCTGTAGCTATTGAAAACTAAGAAatttgaaatataaaaacagaccCAAACACTAATCCAGCctctaattattaattattacctGTAAGTATGTATGCCTATTGCAGATATTAATGTACTTATTTTTGTACatcatgtgtgttttatatggttTCATTGAGaagctactgtactgtactgtgttggGATTTATTTAATAAGTGATTacctttcatttttattttcattgatGCTGTAAGAATGCCTAACTCAGACTGTgatgttaattattatttattgtttctattttaaattatttgtaaatGCCTTCTTTGTGTATTTGTATACACAGTcatgttgttgttattttgaaagGGACCATTAATGGGGAACACACAGTTGGTAATAATGCTATACCTGTTATTGCCTATgacagatttttattatttttcttcagcTGCAGTCCTGGGGCAGGTCCTGTGCACGCTGTGTGATGTCAGTAGTTTTTCTGCACCTGGGTCATATGATTAGTTAATGATCACAGCCTTCCTGAGCTGAATCGGGTGTTTTTAAATCAAGAGAAACACGAGACAGCTGTGCAGCTGGACTACAGAACTGAAGCTGAAGCACTGATCTGATCTAATGCACTGAATGATTTGGAAATGTAAAGACACTAATGTACCCAAACTGTATTTAAACCAGATCCTTATAAATTAACTTTCACCATTCAGCAGTACAGAGCTTGCCTTTACTTATTCTgtgttgtatatgtgtgttttactgtgtgttttaGCTTAGATTTGTCTAAGCTGTCAGTATGATTGAGGTTGTttggaatatactgtatacctgAATATCtgtaatgtttattacagttaaaTAATGAATGCCTGAATCGTGCATTTAGGATTGAGAGCATGTTAGATTGAGAAATTAGGTTAAGAGGCCAGTTTACCCCCTGGTGCACTACAAACCACTGTACTGGGAGATTTTTTACTGTGTCAAAAGTTTTGATTTGCAGTTCAAGTTTTATTACTGCAATTACTGctatgttttctgtttattttcaagatgatacagctctggaaaaaataagagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119241 lncRNA downstream 289715 5986476 ~ 5987401 (-) True G88618
TU119240 lncRNA downstream 297390 5979088 ~ 5979726 (-) True G88617
TU119237 lncRNA downstream 346605 5930011 ~ 5930511 (-) True G88614
TU119236 lncRNA downstream 348896 5927689 ~ 5928220 (-) True G88613
TU119192 lncRNA downstream 745463 5531426 ~ 5531653 (-) True G88574
TU119320 lncRNA upstream 48579 6455601 ~ 6456016 (-) True G88686
TU119322 lncRNA upstream 49467 6456489 ~ 6456722 (-) False G88686
TU119325 lncRNA upstream 49789 6456811 ~ 6457729 (-) True LOC111193291
XR_002650409.1 lncRNA upstream 49881 6456903 ~ 6457611 (-) False LOC111193291
TU119330 lncRNA upstream 82987 6490009 ~ 6490275 (-) True G88690
XM_022673429.1 mRNA downstream 1806 6227605 ~ 6275310 (-) True stk17a
XM_007238664.3 mRNA downstream 51516 6211898 ~ 6225600 (-) True impa2
XM_022673428.1 mRNA downstream 70647 6002319 ~ 6206469 (-) False LOC103047759
XM_007233394.3 mRNA upstream 269522 6676544 ~ 6732664 (-) True vstm2a
XM_007233446.2 mRNA upstream 692216 7099238 ~ 7101459 (-) True LOC103026452
XM_022673435.1 mRNA upstream 696549 7103571 ~ 7215239 (-) True LOC103026131
XM_007233389.3 mRNA upstream 929706 7336728 ~ 7398583 (-) True lancl2
XM_007233388.3 mRNA upstream 1022977 7429999 ~ 7514588 (-) True LOC103034175
TU119041 other downstream 1681791 4595058 ~ 4595325 (-) True G88465
TU119034 other downstream 1710912 4565850 ~ 4566204 (-) True G88458
TU118917 other downstream 2585652 3606470 ~ 3691464 (-) False lyrm4
TU118512 other downstream 3989877 2275608 ~ 2287239 (-) False G88044
TU118200 other downstream 5312039 960006 ~ 965077 (-) True G87802
TU119427 other upstream 710639 7117661 ~ 7118126 (-) True G88779
TU119448 other upstream 834689 7241711 ~ 7242570 (-) True G88789
TU120441 other upstream 3395749 9802771 ~ 9854074 (-) False LOC103029706
TU120626 other upstream 3487803 9894825 ~ 9901700 (-) True G89690
TU120653 other upstream 3554260 9961282 ~ 9964606 (-) True G89708

Expression Profile