RNA id: TU119241


Basic Information

Item Value
RNA id TU119241
length 926
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G88618
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 5986476 ~ 5987401 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCACAGAAGCAATAATACTGATTAAATATGTGagaaatactgaatataaacgataatgaTTTGTAACACAGATCCGATTTTAGACTGTGATTGGGTAAAACCCATTTGCTAAGAGTCAGTATCAGACAGTAACAGCACTCTGAACCCTGATCTCTGTATCAGTACACCTCACTTGCTTGTAACCAAGCAAAAACCAAGTAGCAGCCAAGTTTACATGAGACACAACAAATAATTGCCGGTTCAAAACCCAGGTCATGGTGCTTGCCATCAGTAgctggagtcagagagagccTTATTGGAtatgctccctctgggtggtgAGATGGCACTCTATCCACACATcacttttaatataatgttgtttcagcacaggcatctgtctattagctgatgtatcagagctgagtTGCTGTGCTTTTCTTTAAGTACGCTGGCTTCCAAGTAATGCTACGTAAGTTGTAATTGGACAAGAGCCAGTAGCTGACTTCACAGTTATCGGAGGAGTCATGTGCTGGTGTTCTCTATCCTAATGTTAAGGGCATTATGAGGAATAGGGGGAGCCCTAGTGAGTGGATTGGGGAACTGTGTAACTGATATTTCAATACTGTGTATCTAAATCATGTATGAAAGTATTATGTTCAGGACTGGACAatgatttaaaatcaataattatgggaataaaaaataaaatttaataacggtgacatttttaaaatacatttaaatatacagtacattatttCTTAAGCCTTTTTCATAAGCTTTTAGATACAGACTATTGTCAggattaaaatttaatttaaatcatatggaccaaaatgaataaatatatattgtaaaataaatcttCTAGCCCtaattgtgatattttatttttattgcagatCACACACTTATCAAATTACACTAAATTCTCCTCCCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119240 lncRNA downstream 6750 5979088 ~ 5979726 (-) True G88617
TU119237 lncRNA downstream 55965 5930011 ~ 5930511 (-) True G88614
TU119236 lncRNA downstream 58256 5927689 ~ 5928220 (-) True G88613
TU119192 lncRNA downstream 454823 5531426 ~ 5531653 (-) True G88574
TU119191 lncRNA downstream 494108 5455286 ~ 5492368 (-) True G88573
TU119312 lncRNA upstream 398593 6385994 ~ 6387918 (-) True G88678
TU119320 lncRNA upstream 468200 6455601 ~ 6456016 (-) True G88686
TU119322 lncRNA upstream 469088 6456489 ~ 6456722 (-) False G88686
TU119325 lncRNA upstream 469410 6456811 ~ 6457729 (-) True LOC111193291
XR_002650409.1 lncRNA upstream 469502 6456903 ~ 6457611 (-) False LOC111193291
XM_007238658.3 mRNA downstream 76296 5901238 ~ 5910180 (-) True LOC103042957
XM_007238659.3 mRNA downstream 90941 5881559 ~ 5895535 (-) True cdk13
XM_015602818.2 mRNA downstream 1099174 4879017 ~ 4887302 (-) False rmdn1
XM_007238647.3 mRNA downstream 1099200 4879017 ~ 4887276 (-) True rmdn1
XM_022673402.1 mRNA downstream 1512386 4200272 ~ 4474090 (-) False LOC103047438
XM_022673428.1 mRNA upstream 14918 6002319 ~ 6206469 (-) False LOC103047759
XM_022673426.1 mRNA upstream 14918 6002319 ~ 6206469 (-) False LOC103047759
XM_022673427.1 mRNA upstream 14918 6002319 ~ 6206469 (-) False LOC103047759
XM_022673425.1 mRNA upstream 14918 6002319 ~ 6206469 (-) True LOC103047759
XM_007238664.3 mRNA upstream 224497 6211898 ~ 6225600 (-) True impa2
TU119041 other downstream 1391151 4595058 ~ 4595325 (-) True G88465
TU119034 other downstream 1420272 4565850 ~ 4566204 (-) True G88458
TU118917 other downstream 2295012 3606470 ~ 3691464 (-) False lyrm4
TU118512 other downstream 3699237 2275608 ~ 2287239 (-) False G88044
TU118200 other downstream 5021399 960006 ~ 965077 (-) True G87802
TU119427 other upstream 1130260 7117661 ~ 7118126 (-) True G88779
TU119448 other upstream 1254310 7241711 ~ 7242570 (-) True G88789
TU120441 other upstream 3815370 9802771 ~ 9854074 (-) False LOC103029706
TU120626 other upstream 3907424 9894825 ~ 9901700 (-) True G89690
TU120653 other upstream 3973881 9961282 ~ 9964606 (-) True G89708

Expression Profile