LOC103042957 (ralaa,rala,LOC103042957,LOC107565693,LOC108268083,LOC101477841)


Basic Information

Item Value
gene id LOC103042957
gene name ralaa,rala,LOC103042957,LOC107565693,LOC108268083,LOC101477841
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 5901238 ~ 5910180 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238658.3
GAGgtctgtctctcagtctctgTCTGCAGCTTCAGTTCAGCCCGCCTGATTCAGCTCTGTTCACCCGCACAGTGTGGGCTTTCTGTCCGTCTGGATAGAGGCTACTGCTGGCTAGTCTGACAGCATATCAGTGGTTGGAGTAAAGGGTTAGAAGGCAGGGTTTAATGTGGTGAATCTGGACAGAGAAGGCAGAGAGAAGGGAAGCTCTACCCTCCCAGGGACACAACTCACAGTAAATCTGCTGGATCTACTGATGTCTGGAAGCCACTGACAGTCAGAGGAACTCACTTCTGACCAGCATCTAAGCTTCTCCAGAGTCTTGTTACGGGTCCAAGCCTCCTCCCTTAAGACACCCTTTTACACCATCCACAATCCTTCCCTCTACCCTGACTCCACAACTTGAGTTGCTATGGCAGCCGCCAAGCCAAAAGGGCAGAACTCGCTGGCCCTACATAAGGTGATTATGGTTGGCAGTGGAGGCGTGGGCAAGTCAGCTCTCACCTTACAGTTCATGTATGATGAGTTTGTGGAGGACTATGAGCCCACAAAAGCAGACAGCTACAGAAAGAAGGTGGTCCTGGATGGAGAGGAGGTTCAGATTGACATTCTGGATACAGCAGGTCAGGAGGACTATGCAGCCATTAGGGATAATTACTTCCGCAGTGGAGAAGGCTTCCTCTGCGTCTTCTCCATCACTGAGCTTGAGTCGTTTGCTGCGACTGCGGATTTCAGAGAGCAGATCCTGCGGGTGAAGGAGGATGAGAATGTGCCCTTCCTTCTGGTGGGGAATAAATCGGACCTGGAGGACAGGAGGCAGGTGAGCGCCGATGAGGCCAAGGCCCGGGCTGAGCAATGGGGCGTATGTTACGTCGAAACATCTGCCAAGACCCGCGCCAACGTAGACAAGGTGTTCTTTGACCTAATGAGGGAAATTCGTGCCAGGAAAATGGAGGACAGCAAGGAGAAGAACgggaaaaagaagaggaaaagtCTGGCCAAGAGAATTCGGGAGAGATGTTGCATTTTATAGTAAATGGCGCACTAGTAATCGTTACCATGCTCTTCTcctatgttttaaatatgtatgtttCTCTCTATGTTCCATATTATCACCCCATTGCCAACTAATCCTGGTCTGTGGGGTTTGCAGCATTGTCCTGGTGTTTGTGCGTCAGTGCTGGAGTTGGTTTGATAGAGATTTTGAGGGGATCGAGTCTCCTCAGAAGTATCTAGGTGAAGCTCCCAGGGATCTTTTTTTCCACTGAAATGTGTTCTTCGTCATAGAGCAAGCCCCAGGATCCTGTTGCTCCTTCAAATCACAAACCGGAGCCCTACAGGCCAAAATACGTGGACCACTCTTAACTATGACCCTTATCTCGTATTCAGGTCTCCTTGGTCCGTTGTCTGGCTGACCATGAACTGCCTTAGAATAAAATGAGGTGGAGTTGACTCACTAATGGACTTTATATGGATAATAAATAAGGTCAGAGACACTGAATACAGATCAGCAGGGGGACTGTTGAGTGTCCTTGTTTTCAGTTACGTAAATATGTTGTTAGAGTTAAGATGGTGTGAATTTACCAGTCGTCAGTTGTGATTCAGTAATGAGTTATCAAGTAATCGTTGCcatgcaaatttaaaaaaagcacagtGAGGTTTTTGACCTTAGGTTAATCACTGTTAAACCCTGGCTTGAGAACTGCAAAACACTAAAGTATCTAATTGTTGCTAACTgtgtgctgtttgttttttaatgttttggcccTTATAATTCACTCTGACTTTAACCCTGTTCTGCCAGGCTTGTGAAACACGTGAATTGGAAACAGGAAGTTGATTAAGTTGGTTGTAAGTGTTTGACTTCCTGATGCCTTGATGTCCATTGTGAATGTGAAGTGGACTGACCGGACAGTCCGAGCTCCACGTTAACACACTGACGATTGGTCAGATTGGAATGGCAGGTTGCAGCAAAGGCCACAATGTTTTAATTATCAGCACTGTCTCCACAGGGCCTCGGGCCACAACAGCTCTTTGTATAGCCCTGTGAAAaccactatatattttttttctttttgtgtgtggtgtgtaaatGTGGAAGTTTTGACTTCTTGTATGCTGTTTTCTGTATGGATTTTCTAGACAAATACACTAAACTGAAACGTAATCTGAAACTGGTTCGGATTTATTTTTAGGGCTTTCAGTAACATGGCCaggttattatattatttactatca

Function

symbol description
ralaa Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Ras protein signal transduction and regulation of exocytosis. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in lens and solid lens vesicle. Orthologous to human RALA (RAS like proto-oncogene A).
rala Enables several functions, including Edg-2 lysophosphatidic acid receptor binding activity; enzyme binding activity; and guanyl ribonucleotide binding activity. Involved in several processes, including actin cytoskeleton reorganization; membrane raft localization; and positive regulation of cellular component organization. Located in several cellular components, including cell surface; cleavage furrow; and focal adhesion. Colocalizes with endocytic vesicle. Biomarker of pancreatic ductal adenocarcinoma.

NR:

description
ras-related protein Ral-A

GO:

id name namespace
GO:0007265 Ras protein signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07834 RALA; Ras-related protein Ral-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238658.3 True 2235 mRNA 0.46 5 5901238 5910180

Neighbor

gene id symbol gene type direction distance location
cdk13 cdk13,LOC107713640,LOC107566913 coding downstream 5703 5881559 ~ 5895535 (-)
rmdn1 rmdn1,LOC107729932,LOC107668150,LOC107756855 coding downstream 1013936 4879017 ~ 4887302 (-)
LOC103047438 ralyl,LOC108431401 coding downstream 1427143 4200272 ~ 4474095 (-)
f13a1 NA coding downstream 1854003 4023011 ~ 4047235 (-)
nrn1 nrn1,nrn1a,LOC107713755,LOC107734388 coding downstream 1891499 4000370 ~ 4009739 (-)
LOC103047759 LOC108431241,LOC108271803,LOC107655677 coding upstream 92139 6002319 ~ 6206469 (-)
impa2 impa2 coding upstream 301718 6211898 ~ 6225600 (-)
stk17a stk17a coding upstream 317425 6227605 ~ 6275310 (-)
LOC103045308 LOC108431216,LOC108271758 coding upstream 366936 6277116 ~ 6407022 (-)
LOC103026452 NA coding upstream 1189058 7099238 ~ 7101459 (-)
G88574 NA non-coding downstream 369585 5531426 ~ 5531653 (-)
G88573 NA non-coding downstream 408870 5455286 ~ 5492368 (-)
G88561 NA non-coding downstream 860048 5034539 ~ 5041190 (-)
G88504 NA non-coding downstream 1093522 4807308 ~ 4807716 (-)
G88498 LOC103038427,LOC108431374,LOC106578530 non-coding downstream 1130143 4766319 ~ 4771095 (-)
G88613 NA non-coding upstream 17509 5927689 ~ 5928220 (-)
G88614 NA non-coding upstream 19831 5930011 ~ 5930511 (-)
G88617 LOC103043891,LOC108431261,LOC107734313 non-coding upstream 68908 5979088 ~ 5979726 (-)
G88618 NA non-coding upstream 76296 5986476 ~ 5987401 (-)
G88678 NA non-coding upstream 475814 6385994 ~ 6387918 (-)
G88465 NA other downstream 1305913 4595058 ~ 4595325 (-)
G88458 NA other downstream 1335034 4565850 ~ 4566204 (-)
lyrm4 lyrm4 other downstream 2209690 3606430 ~ 3691548 (-)
LOC103033691 LOC108431537,LOC108266640,LOC107600138,LOC107713778,LOC107687503,LOC107683489,LOC107734392 other downstream 2547363 3336557 ~ 3353875 (-)
G88044 pfkp,LOC101472402,LOC102201923,LOC100702375,LOC102790125 other downstream 3613999 2275608 ~ 2287239 (-)
vstm2a vstm2a other upstream 766095 6676275 ~ 6732664 (-)
LOC103026131 LOC108431006 other upstream 1193391 7103571 ~ 7215239 (-)
G88779 NA other upstream 1207481 7117661 ~ 7118126 (-)
G88789 NA other upstream 1331531 7241711 ~ 7242570 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 3874443 9784623 ~ 9854099 (-)

Expression


Co-expression Network