RNA id: XM_007233446.2


Basic Information

Item Value
RNA id XM_007233446.2
length 1729
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC103026452
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7099238 ~ 7101459 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGAGTTCGTCCAGTGAAGTTCCACTTTGACTTGTGGCTTCAGTCATTCCTAAGCTTGCAGCAGCGAAGACTCATTCTGTGAGAAAGGAATTGTGGTCACTTTCGAAATGGGTGACAACGATTCTGCAGTGTCGACGCTGCCCGGCTATGAATATGATAGTGCGGTGACTTCAGTGTCTCCATGTGAATATACCGACATCAATAATTTCGGTCGCATGTTTCTACCTCCCTTTTATGCCATCATCTTCAACATCAGCCTGCTGGGCAATGGACTGGTCTTGTTTATAATGTACAAGTTTGAAAGCCTCAACACGGTCACCAACATATTCCTCCTCAACCTGGTCGCGTCTAACCTGATTTTCACCTCCAGTCTCCCGTTTCAAGCCGTCTACCATCACTCAGAGTGGATATTTGGACTCGTTGCTTGCAAACTGGTGAACAGCATCTACTTTCTGGGCTTCTACAGCTCCGTCTTCTTCCTCACGCTCATGACATTCGACCGCTACCTGGCCGTGGTCCATGTGGTGTTTGCGACAAAGCAGCGGAGGAGCTGCTACGCCCTGGTATTGGCTGCCGTCGTCTGGATGGTCAGTGTCCTCGCCACCCTGGAGTCTTTTTTCGGCCATGTTGTGTTAGAAGACCCAGTTTTGAAGAGAATCTGCGAAGACAACAGTAACCCAGAGCACAAGATCATGGGCACCTACTCTCAGTTTGTGCTGTTCTTTATCTTCCCTTTGGTCGTCATCCTCTACTGCTACATCAGGATTGGCCTGAGAGTGATCTCCAGCCGAATGAAGGGCAAACACCGGACTGTGAAGCTCATCTTCGTCATTGTGGTGCTGTTCTTCCTGTGCTGGAGCCCGTACAACGTGATCTTATTAATGATGGAGCAGGTAACCGACCCTTGTGACAGCAGCCTTAATTATTCAAAGTATGTCACTCACAACATTGCTCACCTGTACTTCTGCATCAACCCAGTTTTCTACACGTTTTTGGGTCGGAAATTTCAAAATCACGTGCGTCGACTGCTGGTGAAAGAGGTGCCGTGTTTAAAGACCCATTTGACCACCAGTGGAACCAGCAGATCCTTTTCTTAGATGAACCTTGAAGTCTGATGAAAGAAAGTCTGCATCTGtttaactgttaaaaataactgcttctttttttatttctttcttttttatttgtattgtacaGTTCTGAAGGTTGGTGCATAGTGATAAATGTGACCCAATGTAGCCAAGAGTGCATGGGGATATGGCCTGAGGGTAGACTGTGTAGTCTACATTTGAAAATAAGTTGCTTACGACTGTAGATTCTGTAGATTAGACATTGGGTATGGTCCCTGccctcacttaaaaaaaaaaaaagtcagtctGAGCACAAGCTGCTAGAGTTAGTGTAACTTCCTATTAGAGTTATACGTGTCTATTGTATCTACACTGCACTGTAAAGTCTACTGAAGTTCACTGAAAATGTATAGGATAAAGGATAATGTTGTCAATGTTGTTTGATGTTTATGTAAATGTCTGTGGAAATGTCTTCTGGTTATGAATCCTCATGTGAGCAGTGTTCATGTGTTGAGCAAGTCTGTCTGTGACGCACTGAATTTGCAAGCCATTGTTTAATAGAGGGACTGAATAAATCATTGTATAGTACCGAATATGATTACAGATATTGTCACTATAATGTTCActattcattcattaaaaatattgattgagGTTA

Function

GO:

id name namespace
GO:0042221 response to chemical biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119394 lncRNA downstream 58647 7040248 ~ 7040591 (-) True G88749
TU119387 lncRNA downstream 130952 6968062 ~ 6968286 (-) True G88742
TU119354 lncRNA downstream 419460 6676275 ~ 6679778 (-) False vstm2a
TU119355 lncRNA downstream 419460 6676365 ~ 6679778 (-) False vstm2a
TU119348 lncRNA downstream 438223 6660621 ~ 6661015 (-) True G88707
TU119429 lncRNA upstream 30304 7131763 ~ 7148969 (-) False G88780
TU119428 lncRNA upstream 45115 7146574 ~ 7148969 (-) True G88780
TU119431 lncRNA upstream 73915 7175374 ~ 7177614 (-) True G88781
TU119434 lncRNA upstream 73915 7175374 ~ 7177614 (-) False G88781
TU119423 lncRNA upstream 108289 7209748 ~ 7214417 (-) False LOC103026131
XM_007233394.3 mRNA downstream 366574 6676544 ~ 6732664 (-) True vstm2a
XM_022673433.1 mRNA downstream 692216 6277116 ~ 6407022 (-) False LOC103045308
XM_022673431.1 mRNA downstream 692216 6277116 ~ 6407022 (-) False LOC103045308
XM_022673432.1 mRNA downstream 692216 6277116 ~ 6407022 (-) True LOC103045308
XM_022673429.1 mRNA downstream 823928 6227605 ~ 6275310 (-) True stk17a
XM_022673435.1 mRNA upstream 2112 7103571 ~ 7215239 (-) True LOC103026131
XM_007233389.3 mRNA upstream 235269 7336728 ~ 7398583 (-) True lancl2
XM_007233388.3 mRNA upstream 328540 7429999 ~ 7514588 (-) True LOC103034175
XM_007233444.3 mRNA upstream 434519 7535978 ~ 7550381 (-) True LOC103025816
XM_007233387.3 mRNA upstream 456023 7557482 ~ 7636308 (-) True reck
TU119041 other downstream 2503913 4595058 ~ 4595325 (-) True G88465
TU119034 other downstream 2533034 4565850 ~ 4566204 (-) True G88458
TU118917 other downstream 3407774 3606470 ~ 3691464 (-) False lyrm4
TU118512 other downstream 4811999 2275608 ~ 2287239 (-) False G88044
TU118200 other downstream 6134161 960006 ~ 965077 (-) True G87802
TU119427 other upstream 16202 7117661 ~ 7118126 (-) True G88779
TU119448 other upstream 140252 7241711 ~ 7242570 (-) True G88789
TU120441 other upstream 2701312 9802771 ~ 9854074 (-) False LOC103029706
TU120626 other upstream 2793366 9894825 ~ 9901700 (-) True G89690
TU120653 other upstream 2859823 9961282 ~ 9964606 (-) True G89708

Expression Profile