G89690 (zyx,LOC108428910)


Basic Information

Item Value
gene id G89690
gene name zyx,LOC108428910
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 9894825 ~ 9901700 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU120626
ACGTTGACATACATCAGACcgtaaacatacacacattcacatattgaaaagaaatttaaatgttcattatccaaaaataaaaaaagaatttgtaGGTATATATGTAGTAAATGAAAGAAagtcaaagaaaaataaaataggtgTCCGTCATATACTGTAAACTGCAGTAAAACAAATTTGTTCATGTCTGGGAGAAAATTATGATTAATGGAATTAAATATATGGCAATACATTTATTTGGTCATGACTTTTTTTGGGAATGGgagcattcatttttaaatgcatcaGGAATTATAGGAAAGTAAACACTGACCAGGACATTTTGGGTAGAAGGAGTGttttacaaatgaaaaataatgagaGGCAGCGAGAGACTGCACATAAATTCTAACCTGCTGTAGAGTCATTTCAGAAAACCAGTCTAGAAACAGAGCAATACTGTGCGGAACATTCATGAACAATTCtagaaaaatacatgaaaacataaatattataaaataaaaagtgaggaAGGCAGTGggtataaaatgcattttcagGGAATGTTATCTACTTAGATTCTAAGCATTTTCCACAGAATACTCAGAACTAGAACTTTAGGATAGCATATCAGGAGTTTTTGCTAACAGGTGCTTGAGAGAGAGATGAGTTTATTATTGTCTAACTGCAGCTACTGAGTCCTTTAAGGCTTTTGTGCAAAAATTCTAACCGTAACCATATTTTAACCATataatagtgtttttaaaagctgtaaCATTTTCCTAAATTGGCCTTGCATGTCTGGTGATCTGTGTAGCAatgaaaaaccttaaaaatatgGGACATACGTCATAATGTAACCGAGCAATGATCATACACCTTTCTGTTGGACATTCCATGTCAATaggagtcttttttttattacacacgGAATATACAAGGTCAGGAAAACTTGCAAGTTGCAGTCAGCTCAGTGCAAGGCATTGCAACACTTTAATTTAATCTGATACTAGGCATTACATTAGTGAACAGATCGGTTTACCAGTTTGTGTGCTTTGTTAAGTATTTGATCATCATTATcttcaatatttcaatatcaTTATGTTCAATAGTTGATGCATGCACGTTAAACAATGATTTGCCCACaccctattttttttcttcctccgcTGCCAGTCTTTGCAGCATGCATCTATTATTTGCTTGTTAAGTATATTTGCTAAAAGCATTTGTCAAATGACGCAATTACTACTTGACACAGTTCGAATGATTTACTATTTCATTGTAAATATCATCTGTAGGCAATACTAACTCTGCTCAATGTCTTTTGTTCAAAAGGCTAAGGTTAAAGGCTTCTAATGAGAgttgcaatttttttatgtgctgAGGCACGCTGGGAATGGATGAAGGCATTGATGAAGGCAGACAGCTAGGCTGGGGCttcagtacagtacattacctCTGCACCGAACCAGCCAATGAAGCTATCGTCATAGACAGGTCCAAATCCATATCAAACCCTAACGTCACGCCTTTTATTACTCTCACATAATAAAATCAGTGTCATATATTCAAAACTCAACCGTGTGCTGAAGTGGAGTGCTTATGATTTTGCAGAAAATCTTTGAGAAAATATGAGCTGGTGAAAGGCGAAAAGGGTTGAATCTAAAGGCCATGCATAAAACGAGTAACAGAGCTGATAACGTAATTAATTATTCCCTGTGTTTGATTACGTAGCTGAAAACAGGgacagaggggaaaaaaacgaGCAAACAACAACAGAGCTACAGGAGAAGGCAAGGCAAGACAAGAGAGTTACAAAACACGCATGAAACAATGTGGCAACCACATAATCCAAGCGTAGTCAAACTTGTGTATCTTAGATTTGGTTTCAGCACAAATGACAATGGTCTCCACTGATCAGTGCATGGCCTGCTTGGCACGCTTCGTGTGGCACTTCATGCACAGAATTTTTCCATCCAGTGGGTAACAGCCATCAGCATCTGCCTCTATGGACAGAGGGCGGGCACAATCCTCACATCGGTAGCACTTAAGGTGAAAGTTCTTCTCCAAAGCAACAACTCTGACTGTTTCTTCACTTCCAGGGTCAGGGACAATTGGCTCATTGCAGCTCACACACAGAGGAGAGAAACGTCGGTGATAATCAGGAACACAGAATGGGTTGTTATCGTCATCTGTGATGAATGGAGCACCCTCCAGTGTGCATTTACAGGCAGTGCAGCGGAAACAGTGGGCATGGAAACACTGGCCCACCGCTTTCAACACACGATCTGTGATCCTCTCCCCACAGCGGGAACAAATCGCCAGAGAATGCACATAACACTCCTCACACTCGGGCGTTCCATCACGGTCATAGAACTGCATGCCCTGCAGGGGGCGCTGGCAGGTCACGCagcagaaacagtgagagtgGAAAAGTTTGTCCATGGCTCTGACTGCAGGCTGGGATCTGGATAGACCCTCTTTACACTTACCACACACCTCTGTTGGTGCAGAGGTGATAACTGGACCCTTTTTGTCCATGTCTTTAATGAAGTCCTTGGTCATTCTTTCTAGCTCCTCAACTTCTCTCATTGAGAGAGGAACACCACCAGGGGGCGCACCTGCACCAGGAGTCACTTTGGGTGCAGATGGGTTGCCTATTGGTTTGCTGTATGATGAGATGGGTGATGAAGCTGGCTTGGGTTGTGGGGCAGCTGGAGGGGGTGGATTCCATTTTTCCTGGCTGACAACTGGAGCAGGTTTTGAATGACTGAAAACAGGGGTAGGAGCGGGAACACTTGCTGGAGGTGCagcaggaggagcaggaggcGCAGCAGGAGGTGCAGCAGGAGGCGGAGGGAATGAGGCATGGGAGGAGACACTGTTAATCCCTCTTGTACCTGCAGATGTTGCAACATTTCCGAGTTTGGGGCTGAAATTGGAAGTGGGCTGGCTGGGAGAGAAGGTAGATTTAGGCGCGGCTGCAGGGCCTTTAGCCAGCGGCTGTGAGGAGGGGGCTGGAGCAGACGCAGGACTTGGACCTGTCTGTCGGAGGGTGGTCCTGGCACGCAGCTCCTCAGCCCAGGGGGCCGGTGGAGGGCGGTCCTGCAGCTCCGGTGGGGGCAGGAAGGACAGTGCAGGTTTGGGGGCTGTGGGCGGTGGCTTTGGGGCTGGTGCTGATGACAGCTGACTGGG

Function

symbol description
zyx Predicted to enable metal ion binding activity. Predicted to be involved in integrin-mediated signaling pathway and transforming growth factor beta receptor signaling pathway. Predicted to be active in cytoplasm; focal adhesion; and stress fiber. Orthologous to human ZYX (zyxin).

NR:

description
PREDICTED: zyxin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120626 True 3177 TUCP 0.44 7 9894825 9901700

Neighbor

gene id symbol gene type direction distance location
LOC103031716 LOC107748790,LOC107685510,LOC107596678 coding downstream 191323 9685229 ~ 9703502 (-)
LOC103032975 NA coding downstream 213309 9667721 ~ 9681516 (-)
LOC103033935 NA coding downstream 267746 9620792 ~ 9627079 (-)
LOC103035109 NA coding downstream 293561 9588054 ~ 9601264 (-)
LOC103035430 LOC108429015,LOC108273951,LOC107741974,LOC107596682,LOC107684164,LOC107656700 coding downstream 312682 9544171 ~ 9582143 (-)
gtf3c6 gtf3c6 coding upstream 18022 9919722 ~ 9921779 (-)
LOC103024539 NA coding upstream 169935 10071635 ~ 10076554 (-)
rpl18 rpl18 coding upstream 188704 10090404 ~ 10094413 (-)
LOC103039397 LOC103039397 coding upstream 194076 10095776 ~ 10098446 (-)
LOC103039091 LOC108429041 coding upstream 204391 10106091 ~ 10160996 (-)
G89689 NA non-coding downstream 4608 9868963 ~ 9890217 (-)
G89580 NA non-coding downstream 159402 9721984 ~ 9735423 (-)
G89561 LOC108429016,LOC108268427,LOC107748717,LOC107596738,LOC106576890 non-coding downstream 238322 9654483 ~ 9656503 (-)
G89543 NA non-coding downstream 260699 9632576 ~ 9634126 (-)
G89549 NA non-coding downstream 286177 9603627 ~ 9608648 (-)
G89696 emg1,LOC107699927,LOC107744679,LOC107748869,LOC107748863,LOC107685516 non-coding upstream 13230 9914930 ~ 9918017 (-)
G89698 nop2,LOC107749104,LOC107699935,LOC107685519 non-coding upstream 23173 9924873 ~ 9927817 (-)
G89709 NA non-coding upstream 63709 9965409 ~ 9966449 (-)
G89715 NA non-coding upstream 83172 9984872 ~ 10000915 (-)
G89732 NA non-coding upstream 162460 10064160 ~ 10066006 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other downstream 40726 9784623 ~ 9854099 (-)
G88789 NA other downstream 2652255 7241711 ~ 7242570 (-)
LOC103026131 LOC108431006 other downstream 2679586 7103571 ~ 7215239 (-)
G88779 NA other downstream 2776699 7117661 ~ 7118126 (-)
vstm2a vstm2a other downstream 3162161 6676275 ~ 6732664 (-)
G89708 gapdh,LOC107550818 other upstream 59582 9961282 ~ 9964606 (-)
LOC103025178 LOC108429038 other upstream 110117 10011817 ~ 10042853 (-)
G89751 NA other upstream 321820 10223520 ~ 10224663 (-)
lysmd1 lysmd1 other upstream 753771 10655471 ~ 10659606 (-)
vps72 vps72,LOC107571619 other upstream 780656 10682356 ~ 10695334 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010586 zyx coding NC_007127.7 CM002900.2 17302452 ~ 17347727 (-)
grasscarp (Ctenopharyngodon idella) CI01000016_08947581_08961131 ZYX coding CI01000016 null 8946148 ~ 8961131 (-)
bowfin (Amia calva) AMCG00004704 NA coding CM030121.1 CM030121.1 56897603 ~ 56910267 (-)
tiger barb (Puntius tetrazona) G110667 NA non-coding NC_056714.1 CM032083.1 8663804 ~ 8666535 (+)