G89802 (tmod4,LOC107732465,LOC107663362)


Basic Information

Item Value
gene id G89802
gene name tmod4,LOC107732465,LOC107663362
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 10665390 ~ 10666011 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU120814
CCTGGTTGTCAATCTTGATTTCAGCAAGGGTGTTGTTTTTAGCAAGAGCTTTAATGATGGCCATCATTCCGGTTGCGGTGATGAAGTTGGACTCAATGTTCAGGCTCTGCAGTGTGGAGTTCGCTGCCAGCATTTCTGCAGCAAAGGCCACAGGATCATTACTGCGTGTTGCTACAATGCTGAGACTCAGTACGTGAGTGTTTCGCTGCATACCATTGAAGATCTCTTTTAGTGTTGGGATGGGAATGTCCTAAGGGATAGATCAATACTAGtgctgttaataataataaaagaagacGAAAACAGAAGAGGAcaataaggaaaaaaagaagTAGAATGATAGATAAATCAATGAATCAATTGAtataaaaaa

Function

symbol description
tmod4 Predicted to enable tropomyosin binding activity. Acts upstream of or within skeletal myofibril assembly. Predicted to be active in striated muscle thin filament. Is expressed in head muscle and myotome. Orthologous to human TMOD4 (tropomodulin 4).

NR:

description
PREDICTED: tropomodulin-4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120814 True 373 lncRNA 0.40 2 10665390 10666011

Neighbor

gene id symbol gene type direction distance location
scnm1 LOC107732464 coding upstream 1440 10659675 ~ 10663950 (+)
tnfaip8l2 tnfaip8l2,LOC106605333,LOC107587822,LOC107741744,LOC107689840 coding upstream 10435 10635934 ~ 10654955 (+)
LOC103038777 LOC108262134,LOC108441933,LOC107741773,LOC107587875,LOC107689897,LOC105901617 coding upstream 33184 10617522 ~ 10632206 (+)
LOC103023172 si:dkey-27n14.1,LOC108428912,LOC107749301,LOC107685608,LOC107596760,LOC107678125 coding upstream 452709 10206563 ~ 10212681 (+)
LOC111193325 LOC106515060 coding upstream 560274 10101550 ~ 10105116 (+)
hormad1 hormad1 coding downstream 79340 10745351 ~ 10752631 (+)
LOC103043511 LOC108441921,LOC108268121 coding downstream 155379 10821390 ~ 10839317 (+)
LOC103043004 LOC108441920,LOC108272705 coding downstream 177601 10843612 ~ 10862180 (+)
LOC103042489 LOC108441919 coding downstream 208271 10874282 ~ 10883789 (+)
s100a1 s100a1,LOC103041356,LOC108441918,LOC108272706,LOC107587912,LOC107689908 coding downstream 223999 10890010 ~ 10891699 (+)
G89624 rpl18 non-coding upstream 211511 10089884 ~ 10453879 (+)
G89667 NA non-coding upstream 363013 10249309 ~ 10302377 (+)
LOC103022254 NA non-coding upstream 375785 10227943 ~ 10289605 (+)
G89665 NA non-coding upstream 420707 10244327 ~ 10244683 (+)
G89636 NA non-coding upstream 484971 10106125 ~ 10180419 (+)
G89801 tmod4,LOC107663362 non-coding downstream 6708 10672719 ~ 10674178 (+)
G89804 vps72 non-coding downstream 17987 10683998 ~ 10685064 (+)
G89808 NA non-coding downstream 25350 10691361 ~ 10691561 (+)
G89809 NA non-coding downstream 27045 10693056 ~ 10693371 (+)
G89810 NA non-coding downstream 28425 10694436 ~ 10694720 (+)
iffo1 iffo1 other upstream 664476 9975197 ~ 10000914 (+)
G89453 NA other upstream 1055136 9602771 ~ 9610254 (+)
sumo1 NA other upstream 2415956 8242319 ~ 8249434 (+)
LOC111193322 NA other upstream 2585362 8077097 ~ 8080028 (+)
G88849 NA other upstream 3085430 7578610 ~ 7579960 (+)
G89805 NA other downstream 19646 10685657 ~ 10686056 (+)
G89806 NA other downstream 22255 10688266 ~ 10688820 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other downstream 114091 10780102 ~ 10791128 (+)
LOC111193328 NA other downstream 237672 10903683 ~ 10907172 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other downstream 1469268 12135279 ~ 12138862 (+)

Expression


Co-expression Network