G89809


Basic Information

Item Value
gene id G89809
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 10693056 ~ 10693371 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU120822
CTTGTAGGCCTTGGTAACAACTCTGGTCTTCCTGCGAGGTCCATCCTCCTCCTGCTCACTGTCAGGTTCTTCTCCTTCATCGATGTCAAAGTCACTGTCCACCTCATCCTCTGTGTCCGAAAGATCTCCTTTGTACTCATCATCTCCGGATTCCTACAGCAACCACATCAAATGAAGACAATATGACAATTATTGACCTgacactgtaataataatagtttgaaACCTTCATGTCTAAGATCAACAATCAGCCAAATGGGTACACAACACTCCAGAAATAAGTTCTTATAAGTacttatgagatactaagtgtggg

Function

NR:

description
PREDICTED: myosin heavy chain, fast skeletal muscle-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120822 True 316 lncRNA 0.42 1 10693056 10693371

Neighbor

gene id symbol gene type direction distance location
scnm1 LOC107732464 coding upstream 29106 10659675 ~ 10663950 (+)
tnfaip8l2 tnfaip8l2,LOC106605333,LOC107587822,LOC107741744,LOC107689840 coding upstream 38101 10635934 ~ 10654955 (+)
LOC103038777 LOC108262134,LOC108441933,LOC107741773,LOC107587875,LOC107689897,LOC105901617 coding upstream 60850 10617522 ~ 10632206 (+)
LOC103023172 si:dkey-27n14.1,LOC108428912,LOC107749301,LOC107685608,LOC107596760,LOC107678125 coding upstream 480375 10206563 ~ 10212681 (+)
LOC111193325 LOC106515060 coding upstream 587940 10101550 ~ 10105116 (+)
hormad1 hormad1 coding downstream 51980 10745351 ~ 10752631 (+)
LOC103043511 LOC108441921,LOC108268121 coding downstream 128019 10821390 ~ 10839317 (+)
LOC103043004 LOC108441920,LOC108272705 coding downstream 150241 10843612 ~ 10862180 (+)
LOC103042489 LOC108441919 coding downstream 180911 10874282 ~ 10883789 (+)
s100a1 s100a1,LOC103041356,LOC108441918,LOC108272706,LOC107587912,LOC107689908 coding downstream 196639 10890010 ~ 10891699 (+)
G89808 NA non-coding upstream 1495 10691361 ~ 10691561 (+)
G89804 vps72 non-coding upstream 7992 10683998 ~ 10685064 (+)
G89801 tmod4,LOC107663362 non-coding upstream 18878 10672719 ~ 10674178 (+)
G89802 tmod4,LOC107732465,LOC107663362 non-coding upstream 27045 10665390 ~ 10666011 (+)
G89667 NA non-coding upstream 390679 10249309 ~ 10302377 (+)
G89810 NA non-coding downstream 1065 10694436 ~ 10694720 (+)
G89811 NA non-coding downstream 2810 10696181 ~ 10735964 (+)
G89819 NA non-coding downstream 17110 10710481 ~ 10716602 (+)
G89827 NA non-coding downstream 28574 10721945 ~ 10724914 (+)
G89826 NA non-coding downstream 31956 10725327 ~ 10727298 (+)
G89806 NA other upstream 4236 10688266 ~ 10688820 (+)
G89805 NA other upstream 7000 10685657 ~ 10686056 (+)
iffo1 iffo1 other upstream 692142 9975197 ~ 10000914 (+)
G89453 NA other upstream 1082802 9602771 ~ 9610254 (+)
sumo1 NA other upstream 2443622 8242319 ~ 8249434 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other downstream 86731 10780102 ~ 10791128 (+)
LOC111193328 NA other downstream 210312 10903683 ~ 10907172 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other downstream 1441908 12135279 ~ 12138862 (+)
G90199 cct3 other downstream 1461526 12154897 ~ 12156862 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other downstream 1838930 12532301 ~ 12552772 (+)

Expression


Co-expression Network