scnm1 (LOC107732464)


Basic Information

Item Value
gene id scnm1
gene name LOC107732464
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 10659675 ~ 10663950 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249776.3
TCCCACAATGAAAACAGGAAGTCAGGCAGTCGGTGTGAGTGAGAAGTCCGCAGCACCTCGGTTAGCTAAGATAAGCTTAGCTCACTAACTcacagtttaataaaacaatatgtcCTTCAAAAGAGAAGGCGATGATCAGAGCCAGCTAAATGTCCTAAAGAAACGGCGTGTTGCAGATTTACTCTCCAACTTCATACCCGAAGACGAGGCCACTCTGATGAAGAATGGAAGGTATAGCTGTTTAGTCTGTTCACATCGTCCAGTGTTTGATACTGTGGATATGCTGAGTGTACACAGGAAAGGAAAGCGCCATCTTGAAGGTCTAAAATGGTTTTATGGCAAAAAATCGCGATTACAGAACGAAATTGATAAAAGGCGACATCAGGAATATGTTAATAAGGAAGACGACCAGCAGGAAGCTGGAAGCTCAGCACCTTTACTCACACAGACACGGAAAATTACCCACCATGCCTTACTAAGATCTTCTCCTTACAGCAGCTGCCATAAAAAGGCCAGtgAAAGATCAGAGAACGTTACATCAAAAAGCTGTCTTCCAGAGAGCTACATATCTACTGCAACAAGCAGCATAGACACAGAACCCAAACCTGCTGGAGAAACAAATCCGGATCAGTGCCAGAGTGGAAAACAGATGAATAAAAAGAAGGGCTGTAAGGCTCCCAGTGTACCCGAGTCAGAACCTCTGACTGAGCAGAGGCGCAGAGAACTAGAACACTACCTCAAATTAAAGAGtgcCGGATGGTTGCAGGACCCAAGTGGTAAATGGGTAAAGGATGAAAATGTGGAGTTTGATTCAGATGAGGAAGAACCGCTCCCAATACCACCCTCTAGTGAAACTACCTAGATGTCACCAGGAAGCTACTTCAGGAGAAACCTAATGCTCTTTGCCCAAGACATATCCCTGCCTCCCCAAAATAACCTCGCATCTGTATTAAACTAGGAAAAGGCTAGGAAAAGCAGGACTTAAGAAATTTCTGTCCACTGAGGGAGCTAATTGATGTGACTGTTGGATTGACCAAATGGATTATTTTGCCATTAAAAGGGAGAGTAGAAAATGTGTGCCCAAATTTGGATTATCAGATCGCTGTTTTTGCCCCTGCATTGTCCTGCAGCAGTAGACTTGTTTTGAGAGTATGTCCTTGTGGTCTGAGAGAGATCACAGATGTAAAAACAGAATCATATATGACATGAGAGCTCTTAAATCAGCGCTCTGGATCCTGTGCCAAATACCACAGTGCAGTGTGCATCATACAGGGCCACTGCTGACCATGTTGGCCTGTTGTTTGTAATAAATCAAACGAATCACACCACTACACTAATTAATTAGTCTCCATTCTTAAAATCAGGATCTTCTTCCAGTTCAGCCTCTGgatattatgttatatatgaataaaatgtgAAGATATAGCTGTATACATAGCCACAGCTCTCTAAAAAGTCTTGAGAGGTTAGCAGCTGTTTCAAATATGAAACATAAATCTTCTGTTAACCCTGCACCCCCTTTCCCTTCCTGACCTGGTGCTAAGTTCTATTTGGAGCTCTGTAACTCAATCCCAGGGGACTGGCTTTCATATCACCCAGTCTGTAGGCATAAATAGGCAGGTGGCAGAGGATCAGGAAGAGCTATGGCTGGGAATTGAATAGTTCCGACTGGGCTGAGCCCAAAGGGCTCAACAGTAACAAGTTCTGTCTTCACAATGAACTTGTCACACATGGATTCATCACAATAAACAGAGCAGGGGCTGTTTAACACTGAGGAATGTGCTTGTACTGTCAACCACGTGACCGTACTGAAGTTTCAAACAATTCTGTAATTATTACCCTAATCTATGTAATTGAAAACATGGATTTCCAACATTCTGCTTATAGCAGTAATCTGTTTATTGCTGCTAAGTAGCATATTATATTGTGTACAAGTCCAAcctttaatgaataaatgataaaacattgCACCCcca

Function

NR:

description
sodium channel modifier 1 isoform X1

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0016607 nuclear speck cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K24827 SCNM1; sodium channel modifier 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249776.3 True 1976 mRNA 0.43 8 10659675 10663950

Neighbor

gene id symbol gene type direction distance location
tnfaip8l2 tnfaip8l2,LOC106605333,LOC107587822,LOC107741744,LOC107689840 coding upstream 4720 10635934 ~ 10654955 (+)
LOC103038777 LOC108262134,LOC108441933,LOC107741773,LOC107587875,LOC107689897,LOC105901617 coding upstream 27469 10617522 ~ 10632206 (+)
LOC103023172 si:dkey-27n14.1,LOC108428912,LOC107749301,LOC107685608,LOC107596760,LOC107678125 coding upstream 446994 10206563 ~ 10212681 (+)
LOC111193325 LOC106515060 coding upstream 554559 10101550 ~ 10105116 (+)
LOC103039700 NA coding upstream 588196 10026180 ~ 10071479 (+)
hormad1 hormad1 coding downstream 81401 10745351 ~ 10752631 (+)
LOC103043511 LOC108441921,LOC108268121 coding downstream 157440 10821390 ~ 10839317 (+)
LOC103043004 LOC108441920,LOC108272705 coding downstream 179662 10843612 ~ 10862180 (+)
LOC103042489 LOC108441919 coding downstream 210332 10874282 ~ 10883789 (+)
s100a1 s100a1,LOC103041356,LOC108441918,LOC108272706,LOC107587912,LOC107689908 coding downstream 226060 10890010 ~ 10891699 (+)
G89624 rpl18 non-coding upstream 205796 10089884 ~ 10453879 (+)
G89667 NA non-coding upstream 357298 10249309 ~ 10302377 (+)
LOC103022254 NA non-coding upstream 370070 10227943 ~ 10289605 (+)
G89665 NA non-coding upstream 414992 10244327 ~ 10244683 (+)
G89636 NA non-coding upstream 479256 10106125 ~ 10180419 (+)
G89802 tmod4,LOC107732465,LOC107663362 non-coding downstream 1440 10665390 ~ 10666011 (+)
G89801 tmod4,LOC107663362 non-coding downstream 8769 10672719 ~ 10674178 (+)
G89804 vps72 non-coding downstream 20048 10683998 ~ 10685064 (+)
G89808 NA non-coding downstream 27411 10691361 ~ 10691561 (+)
G89809 NA non-coding downstream 29106 10693056 ~ 10693371 (+)
iffo1 iffo1 other upstream 658761 9975197 ~ 10000914 (+)
G89453 NA other upstream 1049421 9602771 ~ 9610254 (+)
sumo1 NA other upstream 2410241 8242319 ~ 8249434 (+)
LOC111193322 NA other upstream 2579647 8077097 ~ 8080028 (+)
G88849 NA other upstream 3079715 7578610 ~ 7579960 (+)
G89805 NA other downstream 21707 10685657 ~ 10686056 (+)
G89806 NA other downstream 24316 10688266 ~ 10688820 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other downstream 116152 10780102 ~ 10791128 (+)
LOC111193328 NA other downstream 239733 10903683 ~ 10907172 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other downstream 1471329 12135279 ~ 12138862 (+)

Expression


Co-expression Network