G93778


Basic Information

Item Value
gene id G93778
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 27090069 ~ 27173131 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU126143
aaaatcggaaataaaatcgattCGAGGATTTAGAGGTGACACCCCTAGTTTTGAAGGAGTTctcagaggtgtttagcacttgttgcccctttgccttcactctgtggtccagctcaccccaaaccatctggattgggttcaggtccggtgactgtggaggacaggtcattttttgttaagtacacaaaactccacatgtgttcattcatagttttgatgccttcagtgagaatctacaatgtaaataatcctgaaaataaagaaaaagcattgaatgagaaggtgtgtccaaacttttggcatGTACTGTAGATGTATCTGCTGTGTAAATCACAGAGCGTGGTATGCAGTCTGCaggttattttaaatatttggacagtgaaaaTGTATAGTATAGTTGCCTCTGTGCACCATTTCTACACCATTTCAATGGATCTGAAATGAAACAATGATTGACTCTGAAAGtgttaacaaaaatatacagaCAGTTTGACAGCAGTTCACAGAAAGTCTCAATAAGCTGCTGATAAAAGAGTGAAGAGTCAATAGACTGAAAATGTCTGGATGTTGAGTTTCCTCCATTTAGATGTTTTGCAGGCCTTTATACTGCAGCCGTCTGCAGCTGCCGCTTGTTTGTCAGACTTTGTACCTTCAGTTTTGTCCACAGTAAGTGAAAAACACATCAAATGGGTCTGAGATTAGGTTTCTGACTCAGTCACATTCCATTTCTTTCACTTACTAAAGCTCTCGGGTGGCTTCTGTGGTTTGTTTTGTGTCTCTGCCCACATCTGTACAGTACAGCACAATCCTATCAGTTTAGCAGCATTTGACTGAATCTGAAGAGAATCCAACCCATTTCCATTCACAGTCATACATACCCTGACATGCCCTGacactgcctccaccatgtgTGACAGATCCTGTTTCAAAATTTTTCCTATCATTTCTACCTAATACAGCTCcggaaaataaattaagagaccacttcagtttctgcatcagtttctctcattttgctatttataggtatatgtttgagtaaaatgaacattgttgttttatt

Function

GO: NA

KEGG:

id description
ko00250 Alanine, aspartate and glutamate metabolism
ko00410 beta-Alanine metabolism
ko04146 Peroxisome

RNA

RNA id representative length rna type GC content exon number start site end site
TU126143 True 1063 lncRNA 0.39 2 27090069 27173131

Neighbor

gene id symbol gene type direction distance location
LOC103037861 scn12ab,LOC108436082,LOC100305061,LOC105894747 coding upstream 276314 26612471 ~ 26813755 (+)
LOC103033764 kcnh2,kcnh2b coding upstream 843903 25871826 ~ 26246166 (+)
sspo sspo coding upstream 1223100 25758101 ~ 25866969 (+)
rgs22 NA coding upstream 1506600 25571785 ~ 25583469 (+)
fbxo43 NA coding upstream 1518879 25564915 ~ 25571190 (+)
LOC103039637 NA coding downstream 24783 27197914 ~ 27205338 (+)
nub1 NA coding downstream 34279 27207410 ~ 27216887 (+)
capn7 capn7,LOC107705521,LOC107755679 coding downstream 51956 27225087 ~ 27248784 (+)
tmem200c tmem200c coding downstream 784747 27957878 ~ 27983782 (+)
LOC103040375 LOC108432756 coding downstream 832067 28005198 ~ 28156592 (+)
G93776 NA non-coding upstream 974 27087939 ~ 27089095 (+)
G93714 exog non-coding upstream 230937 26858740 ~ 26859132 (+)
G93709 NA non-coding upstream 244832 26844562 ~ 26845237 (+)
G93692 NA non-coding upstream 274445 26814912 ~ 26815624 (+)
G93681 wdr48,LOC107753054 non-coding upstream 483943 26591103 ~ 26606126 (+)
G93789 NA non-coding downstream 45094 27218225 ~ 27219969 (+)
G93797 sh3bp5,sh3bp5b,LOC107588490,LOC107755668,LOC107704986,LOC107705532 non-coding downstream 94773 27267904 ~ 27294570 (+)
G93856 NA non-coding downstream 263625 27436756 ~ 27436972 (+)
G93864 NA non-coding downstream 303787 27476918 ~ 27477190 (+)
G93882 NA non-coding downstream 335854 27508985 ~ 27509536 (+)
G93753 NA other upstream 141190 26948463 ~ 26948879 (+)
LOC103034726 LOC108436089 other upstream 697634 26267493 ~ 26392435 (+)
G93185 LOC105900568,LOC101883708 other upstream 1776362 25311877 ~ 25313707 (+)
G93135 NA other upstream 2124625 24914689 ~ 24965444 (+)
G93079 NA other upstream 2381695 24698133 ~ 24708374 (+)
LOC111193309 l3mbtl4,LOC108432753,LOC107698702,LOC107570871,LOC107728988,LOC107653885,LOC106590345 other downstream 745961 27919092 ~ 27939933 (+)
LOC103021747 rheb,LOC107653878,LOC106590380 other downstream 2036147 29209278 ~ 29326025 (+)
LOC103044382 NA other downstream 2077902 29251033 ~ 29346842 (+)
LOC111193374 NA other downstream 2083047 29256178 ~ 29256564 (+)
G94233 NA other downstream 2097172 29270303 ~ 29365656 (+)

Expression


Co-expression Network