G44794


Basic Information

Item Value
gene id G44794
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7162480 ~ 7164707 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU50918
TTTTATCAAAAATATCCTTATTTGTGTTCCGAAGATGAACCGAAGGTCTTACGGGTGTGGAACGACATGAGGGTGAGTAATTAATGACAGAAATTTCATTTTTGGGTGAACTAACCCTTTTAACCTCTGACCTACCGAACATCCATTCACCCACATTTGTAGCTCAGCTGTTCGACTAAAACCGTCACGTCGGATCATTTCCAGAGACTAATGTAGCATTGCATGCTGGTTAACACCACTTTTCATGCTGTTCTCTTGGGCCTGCACTCGGCCCGGACATTTTTATTGATTTTATATTATTAATCAAGCTGTGCTGGTGAAAAAAAAAAAAAAAAAAAAAAAACGATTGTAGCTGTGACGTGTGGGGCTTGGGGACTATCTCTGAGTAACTGCCTTTGTAATGTTTGGGATTTCAGATGGAGTTACGTGACAAGGAAGCGTTTTAAACTTTGATGATGCTCTTTGATTATTCTTTTTGTTTGTTTTTTTGTTTTGTTTTTTCATTTAGATGTACAGTTAAAAATAGACCGATAAATATACAGACAGCACTGTGAAAGTCCACCTTAAAATTGACCCCTGAACTGTGAACTCACAACTGTCTGTCTCACTTTTACCTGTAACAACTCATACCAACAAGGTTTTATGGTAACTATGGGAAGCTTAAAGTACTTTTATCGCAACTTTGTGTGACCGAATCCCTATTGACGTCATTCGCATGTGTATTTTTATCGTTATTCTTTTTTTGTTTTACTACGAAAGAGCCCAAACATACACAAAAACTCTTGAAGTATAGTCCTACCAAAGCAATAATATCAAACGTGCTGCAACAGTTGGAATACTGCGTTGTTGTTGGTGCGCGTGCGTGTGTTTTTCAGTCTACGAACGCTTGTGTGTTCAGTGTATACTGTATTAACCCGACATTTTAGTAGCATTTGTAAGACGTATACGATTCAAGAGATATAACAGCATGCAGAGTATCTCACACCGTATGCAATTACGTGATCTACATGCCAACTCTAGTTCACTGAACGGTAGCTGTGTTTCACTTTAATGGACAAGGTTTCTTTGAACGGCTAGCAAGCATAATGAAATCAGGTACGGTGCTCAGCATTTAATCACAGCACAGTAGCTTACATAGTCACGAGCACACCGTGATAAACTGACTCGCGCGTTCATGTAGTTTAATTCGATGGATGTCAGTGAGTGAATGAGTGAATGAATGAATTTATCCTCCAAACTAAAGTAAATATTTATGGAATGCATGGACAATTGGACGAATGACAATGATTGTACTTTCATATTTAAGAAAAGTGTTTAATCAGATCATAGTGTTTTTGTTTAGTCAATGAAATGAGTGTGCTTTGTGAGACTGCACACGTCCCTTCTCACCAACGCATTAAAACACATATGAGTTCTGCCTCACTGTATATTGTTTTCTACAGTTCACTCAGGTTTGTGTTGACAGATGATTTCTCTTCAATGATTCTAGTTAATACATACTTAACGGCATATCCTATGTCCACTCAAAGGAGTATAAGGATTGTCATGGGTGTTGGGAAGTGTGTAATGGAAGTGATGAAGGACATAGATGCATACGTCTTCAATATCTTATCGCTGCTGTAATTGTTGATCGAGACAAAATTCCTGAAAACAAAGGGGGGAACGGAAGAAAATGTTTTATTTATTTATTTATTTTTGGTTTATGGAACAAAACGATTTAACATTGCAATCATTATGTATTAAAAAAGAGTTTATGTACAATGTTTAACTGTTGCAAAAATCTAGACTTCACCTATACTCCTTTAGAATGGATTAATGACAATATAAACGCAATATCATATTACTCTGTACTAAGGAATGCAACTGCGCACATGCACAGAAAAAATGTTTTTAATAAAGAATATATGTATAAATATATGACAAACTATATTTAATTAGAATGCTATGCACCCTTATTAGAGTTGTTATGGCTGTACTTTAAGTATATTAGTTAGAATCCAGTAATACGAACATGCCCATGTCATGGGGAATGTAGAGGCTTTGTAGCTATTTGAACATGTTTTCATTTCCTTTTTTTATTATTATTGTAACGGAGAGAGGAAATACGAACATTGAATATGTATACAAGCCTTTTATTCAGACTCATTCTGATATGAAGAAATGTATAGACCATTTACCCTGCACACCAGCTCAGATCATTTACAAAAGTTAATAAAGAAAGATGTGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU50918 True 2228 lncRNA 0.36 1 7162480 7164707

Neighbor

gene id symbol gene type direction distance location
CI01000006_07121418_07160572 ANK1 coding upstream 1655 7121169 ~ 7160825 (+)
CI01000006_07078406_07080719 NA coding upstream 81550 7076952 ~ 7080930 (+)
CI01000006_07072315_07073358 NA coding upstream 89069 7071668 ~ 7073411 (+)
CI01000006_07066344_07070484 FTSJ1 coding upstream 91225 7066344 ~ 7071255 (+)
CI01000006_06987083_06990215 NA coding upstream 172122 6987083 ~ 6990358 (+)
CI01000006_07167131_07168925 NA coding downstream 2071 7166778 ~ 7168925 (+)
CI01000006_07194003_07196123 NA coding downstream 29015 7193722 ~ 7196355 (+)
CI01000006_07203185_07207649 NA coding downstream 38478 7203185 ~ 7207660 (+)
CI01000006_07208843_07212249 RGS7BPB coding downstream 43773 7208480 ~ 7212838 (+)
CI01000006_07214841_07222648 C6 coding downstream 50134 7214841 ~ 7222817 (+)
G44818 NA non-coding upstream 98313 7063827 ~ 7064167 (+)
G44817 NA non-coding upstream 98696 7063521 ~ 7063784 (+)
G44780 NA non-coding upstream 167103 6992868 ~ 6995377 (+)
G44747 NA non-coding upstream 185596 6976398 ~ 6976884 (+)
G44755 NA non-coding upstream 191664 6970504 ~ 6970816 (+)
G44821 NA non-coding downstream 8510 7173217 ~ 7173447 (+)
G44793 NA non-coding downstream 58215 7222922 ~ 7312257 (+)
G44851 NA non-coding downstream 150118 7314825 ~ 7315134 (+)
G44852 NA non-coding downstream 150504 7315211 ~ 7315553 (+)
G44853 NA non-coding downstream 151014 7315721 ~ 7315980 (+)
CI01000006_06122278_06122736 NA other upstream 1033805 6122035 ~ 6122751 (+)
CI01000006_06104927_06109730 NA other upstream 1052892 6104927 ~ 6109820 (+)
G43896 NA other upstream 1390705 5770089 ~ 5771775 (+)
G41996 NA other upstream 2038331 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 3426502 3734554 ~ 3736035 (+)
G44872 NA other downstream 191645 7356352 ~ 7387884 (+)
G45178 NA other downstream 457284 7607604 ~ 7683671 (+)
G45265 NA other downstream 719160 7883867 ~ 7920355 (+)
G45336 NA other downstream 854635 8019342 ~ 8021951 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G143990 LOC107589256,LOC107706512,LOC107681141,LOC107708519 non-coding NC_056719.1 CM032088.1 5366192 ~ 5374922 (+)