rhov (rhov,LOC107602886,LOC107659156,LOC107668201,LOC107562688,LOC107721274)


Basic Information

Item Value
gene id rhov
gene name rhov,LOC107602886,LOC107659156,LOC107668201,LOC107562688,LOC107721274
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 56755389 ~ 56758766 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231508.3
TCAGGCTGAGTTGAAGATTGTGGAGCAGTGTCATGAAGTAAAGCGGGCTGAAGGTTGAGGTGTGAGGGATATGTGTGAGTGACTGAGGTGCTGCagtgtgtgctctctctctctctctctctctctctgtctcagtgcTGGGATATCTCAGCTCATAGTCCTCTCAGAGCTCATTTTCAGGGGAATATATCACTCCAGTCTCCAGTCTCTGGTCATGCCACCTCAAATGGATTATTTCTACCAAGAGTCGAGAGTGCCGTCGGTGTGTCTGGACCAGGACGACGGGCTGGAGCCCGCTGTGAGCTGTATGCTGGTGGGAGACGGGGCTGTTGGAAAGACCAGTATGATAGTGAGCTACACCACCAACGGCTATCCCACAGACTATAAACAGACAGCCTTCGACGTGTTCTCAGGACAAGTGCAGGTAGATGGCACACCTGTACGGATTCAGCTGATGGACACAGCCGGACAGGAGGAGTTTGATGGCTTCCGCTCACTATCTTATGCCCACACGGATGTGTTCCTGCTGTGCTTCAGTGTGGTGAACCCCACATCCTTCCAAAACATCACCAAGAAATGGATCCCCGAGATCCGTGCTTGCAACCCGAACTCCCCCATAATCTTGGTTGGAACTCAGTCGGACCTACTGTTGGATGTCAACGTGCTCATAAACTTGGACCGTTGCAAGGTCAAGCCTGTCCTCAGTTCACGGGCTCGGAGCTTGGCAGAGAAGATCAGGGCGGCGGAGTACGTGGAGTGTTCAGCCCTGACGCAGAAGAACCTGAAGGAGGCTTTTGACGCCGCCATATTTGCAGCCATCAAACACAAGGCCAGGAAGGCCAAAAAGATGAGACTGTCGGACAGACGCGCAAAAGCCTTTTCAAAATGCAGCTGGAAGAAGTTCTTCTGCTTCATCTGACCCTGTGGGTCAAAAACACTTGAACTATtttgtgtaatttattatttattttgggaCTGTTGAAATGCAAAGTTGATTTAACTGGAAGAACAACTTTGACCTTCGTGTGGGATGACCTCAACTTTTTGGATTGAAGAACATCTCACCACTCTGCAATCCCTGACTCATTCCATAACTTACTTGTTACACTGTCGTACTAATAACACAGTGGTGCCTGTAATAAGCTGTACACGAAAGACCACGCAAGGCCAATCAGATGTGGAATATACCCTCAATACAGAAAGTTAAAATAGAGCTAGTGTTGATGTTGTAGATCAAGATCTGACATAATTTACACCCTGACAACTGCTCCCTTGGATTCAACATCTTCACTATATGATAAGCACCTAGCACATGTAAATGCTATGAATTTGCATTAATCTATGTGGCTGGTGCTCATTCAAAGCTGTGTAATGCTTCCCACATGTAGGCGTCTGTGAGAAGTTGGCAGGGACCAGAATGGTTATCCATTCTCTGTCTTTGTTGTGGGTGCTACCTTGTCAGACAGGACTTTTCATATGCAACAGCCTGAGCTCAAGCTACAGTGACACTTGTATGCTTGATCTCTTCCTTTTGAACACTTAAAGAGACCAATTCGCGACTTGAGGATTCAGTTTATTCAGCCAACCAGCATCTCTGGGACGGCCATTGTCTTGCAAATTGTTACCATCCAGTGAGGTCTATTTTGTTTGGGGGGGAAACAGAGTCTTCTATTTGGCTCGTTGATCAGTTTTCTAGTATTGCGCTCCCTCCCTCCCAAACTTTCCTACTCTTCTCCATATATTTATGCACCTATTGTGCAACATGAAGTTGGGAACTGTAGACCCCAGTCCACAATGACTTACCTACTTTGGAGTTTGTTTATGTTGATTAGGGTCTTTATCTTGAGGAGGATTGTCTGATAACAGTGTGTACACTTGATGGAGTtaaaaaaagtgctgtttttacTAAAACACTACCTGTTTATTCTTCTTGTAGAAGATATCTTAAATGCTGTTTACCAGTTTTTACTGTTCTGATTTAACGCCAGTAACAGGCGAGAACTTTTTGATCACATTCAAGATGAACATctaaacagtgtttttgtttaataatgtgACAATAAACTGAAGTTTAAAA

Function

symbol description
rhov Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within epiboly involved in gastrulation with mouth forming second and protein localization to adherens junction. Is expressed in several structures, including blastoderm; notochord; segmental plate; solid lens vesicle; and yolk syncytial layer. Orthologous to human RHOV (ras homolog family member V).

NR:

description
PREDICTED: rho-related GTP-binding protein RhoV-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0071896 protein localization to adherens junction biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231508.3 True 2077 mRNA 0.45 3 56755389 56758766

Neighbor

gene id symbol gene type direction distance location
zfyve1 zfyve1,LOC107721321 coding downstream 31615 56712617 ~ 56723774 (-)
LOC103033540 fntb,LOC108424508,LOC107668263,LOC107756604,LOC107721314,LOC107671778,LOC103359368 coding downstream 465551 56274486 ~ 56289838 (-)
LOC103029201 LOC103029201 coding downstream 502812 56240971 ~ 56252577 (-)
LOC103032431 LOC108424505 coding downstream 567534 56173457 ~ 56187855 (-)
gpr176 gpr176 coding downstream 584586 56153714 ~ 56170803 (-)
chac1 chac1,LOC107721326,LOC107739370,LOC107659180,LOC107668209 coding upstream 61719 56820485 ~ 56823051 (-)
dll4 dll4,LOC107562694,LOC107721368,LOC107602157,LOC107668208,LOC107739369 coding upstream 80983 56839749 ~ 56852430 (-)
LOC111189704 NA coding upstream 460144 57218910 ~ 57226087 (-)
vrtn vrtn coding upstream 621047 57379813 ~ 57384666 (-)
zbtb1 zbtb1,LOC107711663,LOC107668253,LOC107721384,LOC107602161,LOC107562689 coding upstream 666539 57425305 ~ 57431655 (-)
LOC111189610 NA non-coding downstream 141322 56588694 ~ 56614067 (-)
G28728 LOC108415780 non-coding downstream 245701 56487213 ~ 56509688 (-)
G28657 srsf5,LOC103029514,LOC107756601,LOC107549086,LOC107602033,LOC107721313 non-coding downstream 515666 56232707 ~ 56239723 (-)
G28661 NA non-coding downstream 527535 56214544 ~ 56227854 (-)
G28634 NA non-coding downstream 564700 56190489 ~ 56190689 (-)
G28813 NA non-coding upstream 65930 56824696 ~ 56825001 (-)
G28823 NA non-coding upstream 251711 57010477 ~ 57010707 (-)
G28938 NA non-coding upstream 1004735 57763501 ~ 57764257 (-)
G28959 prph2l,LOC108424527,LOC107711660,LOC107665408,LOC107569893,LOC107721267,LOC108258119,LOC107602225 non-coding upstream 1039325 57798091 ~ 57798381 (-)
G28960 prph2l,LOC108424527,LOC107569893,LOC107711660,LOC107665408,LOC107602225,LOC107721267 non-coding upstream 1040296 57799062 ~ 57800871 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 60554 56640351 ~ 56694835 (-)
G28536 NA other downstream 938791 55815872 ~ 55816598 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 1114014 55634532 ~ 55641375 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other downstream 1148503 55602870 ~ 55606886 (-)
LOC111189318 NA other downstream 1253629 55499900 ~ 55501760 (-)
ppp4r4 ppp4r4,LOC107711657 other upstream 1053496 57812262 ~ 57841318 (-)
LOC103041090 LOC103041090,LOC108424449 other upstream 1232875 57991641 ~ 57995476 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other upstream 1400441 58159207 ~ 58174704 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 2174197 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 2239775 58998541 ~ 59085886 (-)

Expression


Co-expression Network