LOC103032431 (LOC108424505)


Basic Information

Item Value
gene id LOC103032431
gene name LOC108424505
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 56173457 ~ 56187855 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022663172.1
ttgtattattattgatgTATAAGGTCAGTATAATGTCTATCATTTTACTTTCAGAATTTGACACTGAAATTAGcaaacagaaaatacattatCTCAGTAaagaagacatttttttttattcatgtatccaaatttctatatatatttttttctctgggGAAACTAAGCTACACCGGATTTAGTgatatttctatttttgcatttttataattAAGGAAAGTTGGATAATACAGTCAAAAACTTTTaacaaatcaaacaatttaACACCAAATTTGATATTGTCCAATTTATCCTGAAACAGTGAGAAAACTGAAGTGATACACTTACACTGACCCCCTGTTAACCGGTCACACATGCTTTAACTTCCTCGAGTATTTGTACCAAAGGTCACGCTGCTGCAGAGGAATTCTTACGCATAAGGATCTGGCAACCCGGCTGTTTCCcggtgaaaataataataatactaagaGCGGAGAGATGGCGGCGGTGCTGCTGCGGCGCTTCAGTAAACTCATACCGAGAAACGGCCTAATTAAGACCTACTCCGGAGACTCTGTGCGAGTTGTGATCCTCCCGAGCAGCAGCTGCTCTTATGAGGACAGTGTCCGGATCACAGTGAGCGGACTGGAGCCTCGGCAGCGCGTGGAGCTCCGCTCCCTCCTGCAGGACGATAAGGGGGTGGTGTTCAGAGCTGCGGCCCGGTACCAGGCGGACGGGAGCGGGAAGCTGGACCTGAGCCGACACGCCTCTCTGGGGGGCTCCTACACGGGGGTCGAGCCGATGGGTCTGTTCTGGTCGATGGAGGCGGACGTGCCCCACAGTAAAGTGGTGAAGAGGGACGCCTCGACCCCCCTGTTCGTTCACATAGAGGCTTCCAGCGGGGGGAAGACCCTCGCCCAGGCCACCAATGAGAGACACTTCGCGGTGCAGGGGGTGAGGAGAGTCCCTGTCAGAGACGGCAGGATCCGGGGGACCCTCTTCATACCGCCCGgAGAAGGCCCATTCCCTGCAGTTGTAGATCTGTATACTCTGGGAGGAATTCTGTGTGAGCCGCGAGCAGCTCTGCTGGCCAGTAATGGATTTGTGACACTGGCTCTGGCTCTCTATGGCTACCAGGATATGCCCAGAAAAGTTGATAAGATTGAATTGGAGTACTTTGAAGAAGCCTTAACATTCCTGCAGAATCTGCCTGAGGTCAGTAAAGTTAAACCTCATGTGTGTCATCTTAAGGTGAAGAAGACTGGAGTGGGCATTGTGTCGATCTCAAAGAGTGGAGAACTTGCCCTGGCAATGGCCTCATTCCTACCCAATGTGAAAGCTACTGCCTGGATCAACGGCAACATTGCCAACGTCCTGTTTCCACTCCACTACAAAGACATCGTCCTCCCACCTCtctcagaaaatgttgaaaGAATAACCACAACGGCTTCAGGTATCCTGGACATTAGAGATGTCCTTAATGATCCTATGGATAAAGAGAACCGTTCCAGAGTCATACCGATTGAGCGTGCCAGCTGCAATTTCCTGTTCATCGCGTCCGAAGATGACAGGAACTGGAACAGCGTCTATTATGCAGAACAAGCTTCCAAAATACTTAAAGCACACGGAAAGACAAACTATGACGTGGTGACTTACCCAAAGGCAGGGCACTTTTTGGAAATTCCATACATGCCACATTACCCGTCTGGAATCCACGCTGCAGTGGGTCAAGCAGTTGCTTTTGGAGGAGAACCCAAAGCCCATGCTGTTGCACAGGTTGATACATGGAAAAGACTGCTGGAGTTCTTCAAAAAGCACCTGGAGTTTGCTGATGGCCGTTTAAAATCTTTGCTTTAACCGAGGATGCAGCTGAGGGATTGATATTAAGAAAATTTACAATTAAAAGTCCTTGGTAGAATGTGAAACAATATCATGTGAAATTTAAAATTGTCCttcaacaattaaaaaaacttaaaaccagtTTATACATGAACAACACATTATTTGGGTAATAATCATAGATACATAGCTTAAATCAAATATAAATGAGAGTAATTCTTTCATACTGTCCACACGCACTATGTTACAGTTTATTGATAATCTATTGATGGTCAATGATTTACAGataaattaaaagtgtaattCATCTTATCAATCTAGCGAAGATTACAGCTGGCAACTACAGCCTGTATACAACAATAGTACCATGTTTTTAACTCCTGCTCAATAAATTTCACACTAACAGTCA
>XM_022663175.1
ttattgatgTATAAGGTCAGTATAATGTCTATCATTTTACTTTCAGAATTTGACACTGAAATTAGcaaacagaaaatacattatCTCAGTAaagaagacatttttttttattcatgtatccaaatttctatatatatttttttctctgggGAAACTAAGCTACACCGGATTTAGTgatatttctatttttgcatttttataattAAGGAAAGTTGGATAATACAGTCAAAAACTTTTaacaaatcaaacaatttaACACCAAATTTGATATTGTCCAATTTATCCTGAAACAGTGAGAAAACTGAAGTGATACACTTACACTGACCCCCTGTTAACCGGTCACACATGCTTTAACTTCCTCGAGTATTTGTACCAAAGGTCACGCTGCTGCAGAGGAATTCTTACGCATAAGGATCTGGCAACCCGGCTGTTTCCcggtgaaaataataataatactaagaGCGGAGAGATGGCGGCGGTGCTGCTGCGGCGCTTCAGTAAACTCATACCGAGAAACGGCCTAATTAAGACCTACTCCGGAGACTCTGTGCGAGTTGTGATCCTCCCGAGCAGCAGCTGCTCTTATGAGGACAGTGTCCGGATCACAGTGAGCGGACTGGAGCCTCGGCAGCGCGTGGAGCTCCGCTCCCTCCTGCAGGACGATAAGGGGGTGGTGTTCAGAGCTGCGGCCCGGTACCAGGCGGACGGGAGCGGGAAGCTGGACCTGAGCCGACACGCCTCTCTGGGGGGCTCCTACACGGGGGTCGAGCCGATGGGTCTGTTCTGGTCGATGGAGGCGGACGTGCCCCACAGTAAAGTGGTGAAGAGGGACGCCTCGACCCCCCTGTTCGTTCACATAGAGGCTTCCAGCGGGGGGAAGACCCTCGCCCAGGCCACCAATGAGAGACACTTCGCGGTGCAGGGGGTGAGGAGAGTCCCTGTCAGAGACGGCAGGATCCGGGGGACCCTCTTCATACCGCCCGgAGAAGGCCCATTCCCTGCAGTTGTAGATCTGTATACTCTGGGAGGAATTCTGTGTGAGCCGCGAGCAGCTCTGCTGGCCAGTAATGGATTTGTGACACTGGCTCTGGCTCTCTATGGCTACCAGGATATGCCCAGAAAAGTTGATAAGATTGAATTGGAGTACTTTGAAGAAGCCTTAACATTCCTGCAGAATCTGCCTGAGGTGAAGAAGACTGGAGTGGGCATTGTGTCGATCTCAAAGAGTGGAGAACTTGCCCTGGCAATGGCCTCATTCCTACCCAATGTGAAAGCTACTGCCTGGATCAACGGCAACATTGCCAACGTCCTGTTTCCACTCCACTACAAAGACATCGTCCTCCCACCTCtctcagaaaatgttgaaaGAATAACCACAACGGCTTCAGGTATCCTGGACATTAGAGATGTCCTTAATGATCCTATGGATAAAGAGAACCGTTCCAGAGTCATACCGATTGAGCGTGCCAGCTGCAATTTCCTGTTCATCGCGTCCGAAGATGACAGGAACTGGAACAGCGTCTATTATGCAGAACAAGCTTCCAAAATACTTAAAGCACACGGAAAGACAAACTATGACGTGGTGACTTACCCAAAGGCAGGGCACTTTTTGGAAATTCCATACATGCCACATTACCCGTCTGGAATCCACGCTGCAGTGGGTCAAGCAGTTGCTTTTGGAGGAGAACCCAAAGCCCATGCTGTTGCACAGGTTGATACATGGAAAAGACTGCTGGAGTTCTTCAAAAAGCACCTGGAGTTTGCTGATGGCCGTTTAAAATCTTTGCTTTAACCGAGGATGCAGCTGAGGGATTGATATTAAGAAAATTTACAATTAAAAGTCCTTGGTAGAATGTGAAACAATATCATGTGAAATTTAAAATTGTCCttcaacaattaaaaaaacttaaaaccagtTTATACATGAACAACACATTATTTGGGTAATAATCATAGATACATAGCTTAAATCAAATATAAATGAGAGTAATTCTTTCATACTGTCCACACGCACTATGTTACAGTTTATTGATAATCTATTGATGGTCAATGATTTACAGataaattaaaagtgtaattCATCTTATCAATCTAGCGAAGATTACAGCTGGCAACTACAGCCTGTATACAACAATAGTACCATGTTTTTAACTCCTGCTCAATAAATTTCACACTAACAGTCA
>XM_022663178.1
TTTAAAATCAGCAGGGGGATTATTAAAATCAGTAGGGGGATTTATTCAGTTGTACTTGGCAACCCAGCTCTTTGATACAGTGACCTGTGAGTATCATTAAACAGTGACTGTTCGCTCAGTCGAGATCATGGGCTCCGGAGACTCTGTGCGAGTTGTGATCCTCCCGAGCAGCAGCTGCTCTTATGAGGACAGTGTCCGGATCACAGTGAGCGGACTGGAGCCTCGGCAGCGCGTGGAGCTCCGCTCCCTCCTGCAGGACGATAAGGGGGTGGTGTTCAGAGCTGCGGCCCGGTACCAGGCGGACGGGAGCGGGAAGCTGGACCTGAGCCGACACGCCTCTCTGGGGGGCTCCTACACGGGGGTCGAGCCGATGGGTCTGTTCTGGTCGATGGAGGCGGACGTGCCCCACAGTAAAGTGGTGAAGAGGGACGCCTCGACCCCCCTGTTCGTTCACATAGAGGCTTCCAGCGGGGGGAAGACCCTCGCCCAGGCCACCAATGAGAGACACTTCGCGGTGCAGGGGGTGAGGAGAGTCCCTGTCAGAGACGGCAGGATCCGGGGGACCCTCTTCATACCGCCCGgAGAAGGCCCATTCCCTGCAGTTGTAGATCTGTATACTCTGGGAGGAATTCTGTGTGAGCCGCGAGCAGCTCTGCTGGCCAGTAATGGATTTGTGACACTGGCTCTGGCTCTCTATGGCTACCAGGATATGCCCAGAAAAGTTGATAAGATTGAATTGGAGTACTTTGAAGAAGCCTTAACATTCCTGCAGAATCTGCCTGAGGTCAGTAAAGTTAAACCTCATGTGTGTCATCTTAAGGTGAAGAAGACTGGAGTGGGCATTGTGTCGATCTCAAAGAGTGGAGAACTTGCCCTGGCAATGGCCTCATTCCTACCCAATGTGAAAGCTACTGCCTGGATCAACGGCAACATTGCCAACGTCCTGTTTCCACTCCACTACAAAGACATCGTCCTCCCACCTCtctcagaaaatgttgaaaGAATAACCACAACGGCTTCAGGTATCCTGGACATTAGAGATGTCCTTAATGATCCTATGGATAAAGAGAACCGTTCCAGAGTCATACCGATTGAGCGTGCCAGCTGCAATTTCCTGTTCATCGCGTCCGAAGATGACAGGAACTGGAACAGCGTCTATTATGCAGAACAAGCTTCCAAAATACTTAAAGCACACGGAAAGACAAACTATGACGTGGTGACTTACCCAAAGGCAGGGCACTTTTTGGAAATTCCATACATGCCACATTACCCGTCTGGAATCCACGCTGCAGTGGGTCAAGCAGTTGCTTTTGGAGGAGAACCCAAAGCCCATGCTGTTGCACAGGTTGATACATGGAAAAGACTGCTGGAGTTCTTCAAAAAGCACCTGGAGTTTGCTGATGGCCGTTTAAAATCTTTGCTTTAACCGAGGATGCAGCTGAGGGATTGATATTAAGAAAATTTACAATTAAAAGTCCTTGGTAGAATGTGAAACAATATCATGTGAAATTTAAAATTGTCCttcaacaattaaaaaaacttaaaaccagtTTATACATGAACAACACATTATTTGGGTAATAATCATAGATACATAGCTTAAATCAAATATAAATGAGAGTAATTCTTTCATACTGTCCACACGCACTATGTTACAGTTTATTGATAATCTATTGATGGTCAATGATTTACAGataaattaaaagtgtaattCATCTTATCAATCTAGCGAAGATTACAGCTGGCAACTACAGCCTGTATACAACAATAGTACCATGTTTTTAACTCCTGCTCAATAAATTTCACACTAACAGTCA
>XM_022663181.1
tatatatatttttttctctgggGAAACTAAGCTACACCGGATTTAGTgatatttctatttttgcatttttataattAAGGAAAGTTGGATAATACAGTCAAAAACTTTTaacaaatcaaacaatttaACACCAAATTTGATATTGTCCAATTTATCCTGAAACAGTGAGAAAACTGAAGTGATACACTTACACTGACCCCCTGTTAACCGGTCACACATGCTTTAACTTCCTCGAGTATTTGTACCAAAGGTCACGCTGCTGCAGAGGAATTCTTACGCATAAGGATCTGGCAACCCGGCTGTTTCCcggtgaaaataataataatactaagaGCGGAGAGATGGCGGCGGTGCTGCTGCGGCGCTTCAGTAAACTCATACCGAGAAACGGCCTAATTAAGACCTACTCCGGAGACTCTGTGCGAGTTGTGATCCTCCCGAGCAGCAGCTGCTCTTATGAGGACAGTGTCCGGATCACAGTGAGCGGACTGGAGCCTCGGCAGCGCGTGGAGCTCCGCTCCCTCCTGCAGGACGATAAGGGGGTGGTGTTCAGAGCTGCGGCCCGGTACCAGGCGGACAGGAGCGGGGAGCTGGACCTGAGCCGACACGCCTCTCTGGGGGGCTCCTACACGGGGGTCGAGCCGATGGGTCTGTTCTGGTCGATGGAGGCGGACGTGCCCCACAGTAAAGTGGTGAAGAGGGACGCCTCGACCCCCCTGTTCGTTCACATAGAGGCTTCCAGCGGGGGGAAGACCCTCGCCCAGGCCACCAATGAGAGGCACTTCGCGGTGCAGGGGGTGAGGAGAGTCCCCGTCAGAGACGGCAGGATCCGGGGGACCCTCTTCATACCGCCCGGAGAAGGCCCATTCCCTGCAGTTGTAGATCTGTATACTCTGGGAGGAATTCTGTGTGAGCCGCGAGCAGCTCTGCTGGCCAGTAATGGATTTGTGACACTGGCTCTGGCTCTCTATGGCTACCAGGATATGCCCAGAAAAGTAGATAAGCTTGAACTGGAGTACTTTGAAGAAGCCTTAACATTCCTGCAGAGCCTACCTGAGGTGAAGAAGACTGGAGTGGGCATTGTATCGATCTCAAAGAGTGGAGAACTTGCCCTGGCAATGGCCTCATTCCTACCCAATGTGAAAGCTACTGCCTGGATCAACGGCAATATTGCCAACGTCCTGTTTCCACTCCACTACAAAGACATTGTCTTCCCACCTCTGCCAGTAAGTGCTGAGGGAATAATTGTAAAGGATTCAGGTATACTGGATatcagagatgctcttcttgATTGTATGGAAGAGGAGAACCGTGCCAGTGTCATACCCATTGAGCGTGCCAGCTGCAATTTCCTGTTCATCGTCTCCGAAGATGACAGGAACTGGAACAGCGTCTATTATGCAGAACAAGCTTCCAAAATACTTAAAGCACACGGAAAGACAAACTATGAAGTGGTGACTTACCCAAAGGCAGGGCACTTTTTGGAAATTCCATACATGCCACATTACCCGTCTGGAATCCACGCTGCAGTGGGTCAAGCAGTTGCTTTTGGAGGAGAACCCAAAGCCCATGCTGTTGCACAGGTTGATACATGGAAAAGACTGCTGGAGTTCTTCAAAAAGCATTTATGATGTATTATGATATTTCATACTGTATACTGATATTGCTTTGGAAAGCTACATACCTCTTATTGTTCACTAAACTTTAATAAGTGAAGATTAAACTTTATAGCTACTTGAAGTTGTTGATATGCCTAATATGACAGTATTTTAGAATCAAACAAATTATGTAGTTTTTAGCACTTACAATAAGATTTAATCGTGTGTTTAAACAACTACAGCACTGACAAAAATGTGAAGTTGTGGTGCAGTGGGTACAGACAGGGTATCAGTTTTATGTAGGCCAGTCATATTACTTAACACAAGTGCAATCATGCAAATCATGTTTGTTATAACATCCAACAGAATGTGATTTAGGGACGTTTTTCACCATTCCTTTAAGGGAATAGTATGCTACATCATAAAGTGAAAGTACATTTACTGCtttagaaaaacaacaaaacttcTGACTGATGCCTTAGAGCTTTAGAGAGCTGCTGTGATTGAGCTGTGTCAGTTGGGATCTACTAAGTGTCAACAGTTAGGAAGCTAGACAGCTAATTAGCAAATTTGaagaattttatatttattatctttCATAGACCggaatattgtttatttataattatttttatggcatttaaatattagcaaaaatgtcaatacattattttatgctGACACACAATGTAATTGTATCACTGTAATGAGGGCATGAGACCTGTCCCATCACTAAGATGGCCTAAATTGTTTAATGTATGAAATTGGAACAAATGTCATCTTTATACcagagaataaaataattgcACAATTACCACGTACCTTTAGGAACGGCTGCACAACCTGTTTTGCTTATTCATAGTTACCAGGTGAACCCATGCTAGAGTTGGAAACAGAGTGAGTTTGCCAAAGAGGCatctgtggaaaaaaatgtgattccATTGAACAAAGCCAGTTGTGAATATTCTtaccaatattttaaatacatgacTTTGTAATGTATTTGTAAAGATTCTGCATGGCAATATCTGTTGACCCATTTGCCTTTAGTTTGCTGCCATCCAGGTCTAATTATGGCAAATTGGattcaggctttttttttttttccaacaaatTTCTGAAATTCATTTCACACAAGAACACAGTGCATTATGTTCCGTGCCTCTGTCTGTTATGAATTGTGAGTGAGAGCCATGTTGctttatttctgtaacatttaatgtttaataaaaactgaTGTATCTTTATACATTAAAAA

Function

NR:

description
PREDICTED: acyl-coenzyme A thioesterase 1-like

GO: NA

KEGG:

id description
K01068 ACOT1_2_4; acyl-coenzyme A thioesterase 1/2/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022663172.1 False 2227 mRNA 0.45 4 56173457 56187855
XM_022663175.1 False 2183 mRNA 0.45 4 56173457 56187847
XM_022663178.1 False 1817 mRNA 0.47 3 56173457 56180131
XM_022663181.1 True 2856 mRNA 0.43 3 56183072 56187719

Neighbor

gene id symbol gene type direction distance location
gpr176 gpr176 coding downstream 2654 56153714 ~ 56170803 (-)
mthfd1l mthfd1l,si:ch211-266i18.6,LOC107665399 coding downstream 47897 56055205 ~ 56125560 (-)
LOC103043128 NA coding downstream 130172 55949627 ~ 56043285 (-)
armt1 armt1 coding downstream 242271 55924510 ~ 55931186 (-)
LOC103043741 LOC108424497 coding downstream 254211 55889634 ~ 55919246 (-)
LOC103029201 LOC103029201 coding upstream 53116 56240971 ~ 56252577 (-)
LOC103033540 fntb,LOC108424508,LOC107668263,LOC107756604,LOC107721314,LOC107671778,LOC103359368 coding upstream 86631 56274486 ~ 56289838 (-)
zfyve1 zfyve1,LOC107721321 coding upstream 524762 56712617 ~ 56723774 (-)
rhov rhov,LOC107602886,LOC107659156,LOC107668201,LOC107562688,LOC107721274 coding upstream 567534 56755389 ~ 56758766 (-)
chac1 chac1,LOC107721326,LOC107739370,LOC107659180,LOC107668209 coding upstream 632630 56820485 ~ 56823051 (-)
G28617 NA non-coding downstream 25719 56147176 ~ 56147738 (-)
G28606 NA non-coding downstream 43725 56129195 ~ 56129732 (-)
G28604 NA non-coding downstream 46933 56126157 ~ 56126524 (-)
G28567 NA non-coding downstream 278618 55894509 ~ 55894839 (-)
G28568 NA non-coding downstream 283354 55886323 ~ 55890103 (-)
G28634 NA non-coding upstream 2634 56190489 ~ 56190689 (-)
G28661 NA non-coding upstream 26689 56214544 ~ 56227854 (-)
G28657 srsf5,LOC103029514,LOC107756601,LOC107549086,LOC107602033,LOC107721313 non-coding upstream 44852 56232707 ~ 56239723 (-)
G28728 LOC108415780 non-coding upstream 299358 56487213 ~ 56509688 (-)
LOC111189610 NA non-coding upstream 400839 56588694 ~ 56614067 (-)
G28536 NA other downstream 356859 55815872 ~ 55816598 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 532082 55634532 ~ 55641375 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other downstream 566571 55602870 ~ 55606886 (-)
LOC111189318 NA other downstream 671697 55499900 ~ 55501760 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other downstream 728788 55432081 ~ 55444669 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other upstream 452496 56640351 ~ 56694835 (-)
ppp4r4 ppp4r4,LOC107711657 other upstream 1624407 57812262 ~ 57841318 (-)
LOC103041090 LOC103041090,LOC108424449 other upstream 1803786 57991641 ~ 57995476 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other upstream 1971352 58159207 ~ 58174704 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 2745108 58932963 ~ 58934789 (-)

Expression


Co-expression Network