LOC103033540 (fntb,LOC108424508,LOC107668263,LOC107756604,LOC107721314,LOC107671778,LOC103359368)


Basic Information

Item Value
gene id LOC103033540
gene name fntb,LOC108424508,LOC107668263,LOC107756604,LOC107721314,LOC107671778,LOC103359368
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 56274486 ~ 56289838 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231521.3
CAGATCTTGTGGTCATGTGGTGTGACTGCGGTGGGAGCTTTATGGGTTGGACTTGAGTTATTGATCAGCGGATCCTCGCAGCGTCCCGATAAACACGCAAGAAGAGGCGCTGAGTTGCTGTAAGAACTAGCTGTCTGCCCTCGCTGTGATTTTAGGGAGACGTTAGGAGCCCCGCGGGGTTTTAACCGCTGGTTCAGTGAGAGCACTGCGCGCTGCTGTGTCTCTCCACAGACTGTATATATCTCTGTCATCATCATGGAGTCCCAGTccccgccgccgccgctgcgCTGCTTCAGCGACTCCCATCAGTCGGAGCTGTTCAGAGATGACGGCGTGCAGACGGTGACTTCAGCGGAGCAGAGAAAAGTCGAACGCAGTATTCAAGACGTACTCACTGTTTACCAGCAAATACACAGCTTACCACAgCCCACCTTACTAAGGGAGCAACACTATCAATATCTCAAGAAAGGTTTACGCCATCTTTCAGATGCCTATGAGTGTTTGGATGCCAGCCGGCCTTGGCTCTGTTACTGGATCCTGCAcagtctggagctgctggaggagcCAGTTCCTGCTGCTGTGGCATCAGATGTGTGTCAGTTCCTGGCCCGGTGTCAAAGCCCAACAGGGGGCTTCGCTGGAGGTCCAGGGCAGCATGCCCACTTGGCGCCCACCTACGCTGCTGTAAACGCCCTGTGCATCCTGGGCACGGAGGAGGCGTACAACGTCATAAACAGAGAGAAGCTCCTGGACTTCCTGTACTCCGTGAAGCAGCCAGATGGTTCCTTTGTGATGCATGTGGGTGGGGAGGTGGACGTCAGGAGTGCGTACTGTGCTGCCTCTGTGGCTTCTCTCACAAACATCATCACACCAACGCTGTTTGAGGGAACCCACAATTGGATCATCAGCTGTCAGAATTGGGAAGGTGGTCTCGGTGGGGTGCCCGGCTTGGAGGCCCATGGTGGATACACCTTCTGCGGCACAGCAGCTCTCGTCATCTTGGGAAAGGAACACATGCTGGACCTCAAGGCTTTATTACGCTGGGTGACCAGCAGGCAGATGCGCTTTGAGGGAGGATTCCAGGGACGCTGTAATAAACTGGTGGATGGCTGTTACTCCTTCTGGCAGGCTGGTCTTCTGCCGCTGCTTCACAGAGCTCTCTTTAAAGATGGTGACATGACGTTGAGTCTGAGCAGCTGGATGTTTGAGCAGCAGGCTCTGCAGGAGTACATCCTGCTCTGCTGCCAAAACCCTGCAGGCGGATTGCTGGACAAACCTGGCAAGTCCAGGGACTTCTACCACACCTGCTACTGTCTGAGTGGTCTCTCAGTAGCACAGCACTTCGGAAACAAAGATCTCCACCACGAGCTGATCCTCGGCAAAGAGGAGAACAGACTGGCACCGACTCACCCTGTGTACAACATATGCCCGGAGAAGGTCGCTCAAGCCATCCAGTATTTCCATCAGCTGCCAATACCAGCCCAGAACGGAGAGCCAGCGTGTGCTGAAGACCAGTCATAGTCAACGTTTTTCTAAACCTTAAAGGAATCAGTCAGTTGTTCTCTGGGCTACGAGCTGGAACCTGGTGTGCTGATGCTGTAGTCAAAAGCTGTGCTGGTGATAACTGCCCAGTTCTTGAAGAGGCAGAGTTACTAAACCTGTTCACATGTGCAAATGACTTCTGCTTTAGAAAGGGGTTTTCATACACCACTTCTTGATACTGCACATGCTTAgcctttttaacatgttttagtAATATGTAAGTGGTGGTAAGCCTGGGCTGAAAAAATAAAGGCTTGGACAGCGTTTTCCTGCA

Function

symbol description
fntb Predicted to enable prenyltransferase activity and zinc ion binding activity. Predicted to contribute to protein farnesyltransferase activity. Acts upstream of or within cardiac ventricle development. Predicted to be part of protein farnesyltransferase complex. Is expressed in heart. Orthologous to several human genes including CHURC1-FNTB (CHURC1-FNTB readthrough).

NR:

description
PREDICTED: protein farnesyltransferase subunit beta-like

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0018343 protein farnesylation biological_process
GO:0005965 protein farnesyltransferase complex cellular_component
GO:0016740 transferase activity molecular_function

KEGG:

id description
K05954 FNTB; protein farnesyltransferase subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231521.3 True 1816 mRNA 0.53 12 56274486 56289838

Neighbor

gene id symbol gene type direction distance location
LOC103029201 LOC103029201 coding downstream 21909 56240971 ~ 56252577 (-)
LOC103032431 LOC108424505 coding downstream 86631 56173457 ~ 56187855 (-)
gpr176 gpr176 coding downstream 103683 56153714 ~ 56170803 (-)
mthfd1l mthfd1l,si:ch211-266i18.6,LOC107665399 coding downstream 148926 56055205 ~ 56125560 (-)
LOC103043128 NA coding downstream 231201 55949627 ~ 56043285 (-)
zfyve1 zfyve1,LOC107721321 coding upstream 422779 56712617 ~ 56723774 (-)
rhov rhov,LOC107602886,LOC107659156,LOC107668201,LOC107562688,LOC107721274 coding upstream 465551 56755389 ~ 56758766 (-)
chac1 chac1,LOC107721326,LOC107739370,LOC107659180,LOC107668209 coding upstream 530647 56820485 ~ 56823051 (-)
dll4 dll4,LOC107562694,LOC107721368,LOC107602157,LOC107668208,LOC107739369 coding upstream 549911 56839749 ~ 56852430 (-)
LOC111189704 NA coding upstream 929072 57218910 ~ 57226087 (-)
G28657 srsf5,LOC103029514,LOC107756601,LOC107549086,LOC107602033,LOC107721313 non-coding downstream 34763 56232707 ~ 56239723 (-)
G28661 NA non-coding downstream 46632 56214544 ~ 56227854 (-)
G28634 NA non-coding downstream 83797 56190489 ~ 56190689 (-)
G28617 NA non-coding downstream 126748 56147176 ~ 56147738 (-)
G28606 NA non-coding downstream 144754 56129195 ~ 56129732 (-)
G28728 LOC108415780 non-coding upstream 197375 56487213 ~ 56509688 (-)
LOC111189610 NA non-coding upstream 298856 56588694 ~ 56614067 (-)
G28813 NA non-coding upstream 534858 56824696 ~ 56825001 (-)
G28823 NA non-coding upstream 720639 57010477 ~ 57010707 (-)
G28938 NA non-coding upstream 1473663 57763501 ~ 57764257 (-)
G28536 NA other downstream 457888 55815872 ~ 55816598 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 633111 55634532 ~ 55641375 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other downstream 667600 55602870 ~ 55606886 (-)
LOC111189318 NA other downstream 772726 55499900 ~ 55501760 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other downstream 829817 55432081 ~ 55444669 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other upstream 350513 56640351 ~ 56694835 (-)
ppp4r4 ppp4r4,LOC107711657 other upstream 1522424 57812262 ~ 57841318 (-)
LOC103041090 LOC103041090,LOC108424449 other upstream 1701803 57991641 ~ 57995476 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other upstream 1869369 58159207 ~ 58174704 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 2643125 58932963 ~ 58934789 (-)

Expression


Co-expression Network