RNA id: XM_007231521.3


Basic Information

Item Value
RNA id XM_007231521.3
length 1816
RNA type mRNA
GC content 0.53
exon number 12
gene id LOC103033540
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 56274486 ~ 56289838 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGATCTTGTGGTCATGTGGTGTGACTGCGGTGGGAGCTTTATGGGTTGGACTTGAGTTATTGATCAGCGGATCCTCGCAGCGTCCCGATAAACACGCAAGAAGAGGCGCTGAGTTGCTGTAAGAACTAGCTGTCTGCCCTCGCTGTGATTTTAGGGAGACGTTAGGAGCCCCGCGGGGTTTTAACCGCTGGTTCAGTGAGAGCACTGCGCGCTGCTGTGTCTCTCCACAGACTGTATATATCTCTGTCATCATCATGGAGTCCCAGTccccgccgccgccgctgcgCTGCTTCAGCGACTCCCATCAGTCGGAGCTGTTCAGAGATGACGGCGTGCAGACGGTGACTTCAGCGGAGCAGAGAAAAGTCGAACGCAGTATTCAAGACGTACTCACTGTTTACCAGCAAATACACAGCTTACCACAgCCCACCTTACTAAGGGAGCAACACTATCAATATCTCAAGAAAGGTTTACGCCATCTTTCAGATGCCTATGAGTGTTTGGATGCCAGCCGGCCTTGGCTCTGTTACTGGATCCTGCAcagtctggagctgctggaggagcCAGTTCCTGCTGCTGTGGCATCAGATGTGTGTCAGTTCCTGGCCCGGTGTCAAAGCCCAACAGGGGGCTTCGCTGGAGGTCCAGGGCAGCATGCCCACTTGGCGCCCACCTACGCTGCTGTAAACGCCCTGTGCATCCTGGGCACGGAGGAGGCGTACAACGTCATAAACAGAGAGAAGCTCCTGGACTTCCTGTACTCCGTGAAGCAGCCAGATGGTTCCTTTGTGATGCATGTGGGTGGGGAGGTGGACGTCAGGAGTGCGTACTGTGCTGCCTCTGTGGCTTCTCTCACAAACATCATCACACCAACGCTGTTTGAGGGAACCCACAATTGGATCATCAGCTGTCAGAATTGGGAAGGTGGTCTCGGTGGGGTGCCCGGCTTGGAGGCCCATGGTGGATACACCTTCTGCGGCACAGCAGCTCTCGTCATCTTGGGAAAGGAACACATGCTGGACCTCAAGGCTTTATTACGCTGGGTGACCAGCAGGCAGATGCGCTTTGAGGGAGGATTCCAGGGACGCTGTAATAAACTGGTGGATGGCTGTTACTCCTTCTGGCAGGCTGGTCTTCTGCCGCTGCTTCACAGAGCTCTCTTTAAAGATGGTGACATGACGTTGAGTCTGAGCAGCTGGATGTTTGAGCAGCAGGCTCTGCAGGAGTACATCCTGCTCTGCTGCCAAAACCCTGCAGGCGGATTGCTGGACAAACCTGGCAAGTCCAGGGACTTCTACCACACCTGCTACTGTCTGAGTGGTCTCTCAGTAGCACAGCACTTCGGAAACAAAGATCTCCACCACGAGCTGATCCTCGGCAAAGAGGAGAACAGACTGGCACCGACTCACCCTGTGTACAACATATGCCCGGAGAAGGTCGCTCAAGCCATCCAGTATTTCCATCAGCTGCCAATACCAGCCCAGAACGGAGAGCCAGCGTGTGCTGAAGACCAGTCATAGTCAACGTTTTTCTAAACCTTAAAGGAATCAGTCAGTTGTTCTCTGGGCTACGAGCTGGAACCTGGTGTGCTGATGCTGTAGTCAAAAGCTGTGCTGGTGATAACTGCCCAGTTCTTGAAGAGGCAGAGTTACTAAACCTGTTCACATGTGCAAATGACTTCTGCTTTAGAAAGGGGTTTTCATACACCACTTCTTGATACTGCACATGCTTAgcctttttaacatgttttagtAATATGTAAGTGGTGGTAAGCCTGGGCTGAAAAAATAAAGGCTTGGACAGCGTTTTCCTGCA

Function

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0018343 protein farnesylation biological_process
GO:0005965 protein farnesyltransferase complex cellular_component
GO:0016740 transferase activity molecular_function

KEGG:

id description
K05954 FNTB; protein farnesyltransferase subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38478 lncRNA downstream 34763 56232707 ~ 56239723 (-) True G28657
TU38483 lncRNA downstream 46632 56214544 ~ 56227854 (-) True G28661
TU38440 lncRNA downstream 83797 56190489 ~ 56190689 (-) True G28634
TU38417 lncRNA downstream 126748 56147176 ~ 56147738 (-) True G28617
TU38406 lncRNA downstream 144754 56129195 ~ 56129732 (-) True G28606
TU38563 lncRNA upstream 197375 56487213 ~ 56509688 (-) True G28728
XR_002648824.1 lncRNA upstream 298856 56588694 ~ 56614067 (-) True LOC111189610
TU38701 lncRNA upstream 534858 56824696 ~ 56825001 (-) True G28813
TU38712 lncRNA upstream 720639 57010477 ~ 57010707 (-) True G28823
TU38861 lncRNA upstream 1473663 57763501 ~ 57764257 (-) True G28938
XM_007232921.3 mRNA downstream 21909 56240971 ~ 56252577 (-) False LOC103029201
XM_015601199.2 mRNA downstream 22041 56241020 ~ 56252445 (-) True LOC103029201
XM_022663172.1 mRNA downstream 86631 56173457 ~ 56187855 (-) False LOC103032431
XM_022663175.1 mRNA downstream 86639 56173457 ~ 56187847 (-) False LOC103032431
XM_022663181.1 mRNA downstream 86767 56183072 ~ 56187719 (-) True LOC103032431
XM_022663292.1 mRNA upstream 350513 56640351 ~ 56694835 (-) False LOC103031416
XM_007231515.3 mRNA upstream 350513 56640351 ~ 56694140 (-) False LOC103031416
XM_015600801.2 mRNA upstream 350513 56640351 ~ 56694077 (-) False LOC103031416
XM_022663289.1 mRNA upstream 350513 56640351 ~ 56694077 (-) True LOC103031416
XM_007231513.3 mRNA upstream 422779 56712617 ~ 56723774 (-) True zfyve1
TU38322 other downstream 457888 55815872 ~ 55816598 (-) True G28536
TU38270 other downstream 667600 55602870 ~ 55606886 (-) True G28501
TU38271 other downstream 668204 55602870 ~ 55606282 (-) False G28501
TU38133 other downstream 772726 55499900 ~ 55501760 (-) True LOC111189318
XR_452898.2 other upstream 356189 56646027 ~ 56694125 (-) False LOC103031416
TU39086 other upstream 1879483 58169321 ~ 58174704 (-) False LOC111189852
TU39330 other upstream 2643125 58932963 ~ 58934789 (-) True G29317
TU39539 other upstream 3147762 59437600 ~ 59438298 (-) True G29478
TU39714 other upstream 3867700 60157538 ~ 60162024 (-) False LOC103034188

Expression Profile