G3342 (ap2s1)


Basic Information

Item Value
gene id G3342
gene name ap2s1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13075597 ~ 13205546 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4377
TCATATAACTTGAGGAATTTTATTTCTTCGTTTCACGTTGGTGGGTTTACATACTGATACAAATGGAAACAGCGAGTGGAAACGGCACATTTCCTTCAGTCTGCCATCTCACAGGGACAAGTGCATAAGAGATTTCATAGGAtatttcaaaaagaaaaaaacaaaagattaaaaaaacacagaatttaacagTACTTAATGAAACTAACGCTTAATACACCAGTTTTAGATCTAGTTTATAATCACAGAAACTCAGTATCCTGAAAaccagccctggaaaaaaaagagattcaAGGCTGAGCTGAGCGGTTGCTACGCTACCCAGAATACAGGGAGCGGTGCCACAAAAGTTGGAGATGAAAGTAAATGCAGGCTTTTGTCATGTGTTCCTCCTTTAAGTGGCATCGGATCTGTTCGGCCTTGCTGGCTAAACAAGCTCGGCCTCAGAGCCTGGAGCCTGCCTTCGTTACCGCAGCCAACACACACCCCAGCAACTGGTAATAACTTGACTTCTTCTAGGCCTGTTAGATGATCATTTAGCCAGTGTGGCAGCTGATCTCAGCACAGTGGGATATGATTGGCAAGAAGATTGGAAGAAAGCAAAGGAAAAAGACAGGACAGAACGGTTTGTTTAATGGAATGAAAAGCTGTTAGTTTCATATACTATATGATCTAAGTATATATATGATACATAttgtttctatatatatataatgtatattacaCACGATACAAAAAAATGGACTTGTCACTGAGAGATTCTGCTTAACAGACCCAGTGATttcatgattaataataataataaaaaaggaatgaCTTTTGTctaataaagaatataaaagtTGCCTTATGTGGATTTGAGAAATGTATACACCAtgaccagccataacattagcaccacctGCCTACTACTGTCTATTGAGTAGGTTCTCCACAAGTATCTCCTGTTTTACAACTGCAActaatgcagcatcactaggcagccAATGTGCTCGAAGGAAAGTGACGGATACCCAGCTACAATAAATCAGCTATCAGATATCTGTGCAGGCCAACATCTCAACAACAGAGAACAAGAGaattctctcagactctggctgctaaCGTCAAAGCATCACCATTTACCCACAGCAGATCTTTTTATGTCCTTTAAGTTGAGGTAGGGTCTCAAAGACGGTCACTGGTTCACTGATGAGCGTGGAACTTGAAGTAGTCTGTTTTGGTTGGCACACCCAATTTTAAACCATCTTGCTCATATCCATCCACAGAAATAGGTTTTCCTGGAACCCAAAAAGGTTGTTCTCAGCTGGAACTGAAAAATAGCAGTGTGCAGCTCGTTCTGTAGATGACATATTCTGTGATGTATCTACTGTGTTCAACTAAAACTGGTGCAAACGTGGGCTGGTTCACTGAAAAACAATCTCCAAGGTTCTTAAATATCCAAATGGACTTGTATCGGTCAAAAGGGGCTAAAATTCTTCTTTCTTTGACAATTGCATAGCAGGGAAACCCCACAAGTCTAACCTGACaatttttggagatgttctgaccgtCCAGTCATCTATCCCAACACTTTAGTTCTTGTTATTTTTACTCAGATCTTTATGCTTGCTAACGTTTTTCACTTTTCTCACTTCACCAGTCAGTAGTGCTAATATTATGGTTGACCTGTGTACAGTACAGACCTATAAGCAAATAAACAATAGACAAAGTTAATGTAGCGCCAGTTACATTTCTACATTGTTCTACATTGCAGGTAGTGTAGAttttaattagttgagacagATGATCACATTTCCAGTGCTGAGGTGGCTTCTGTTCATTAAGTTGCTGCTTTAGTGTTATGGGAAGAGTAGGAATGGAGGAACAGCACCATGCTTTAGGGGCAGCTGTTCTAGAACTGCATAATTCTGGAGGCAGAATTGAGAATACAATACAACATGTATTGAGATAATACAACCTGGGGAATATGTGAACAATAATAAACCACTTAGGCCACTCAAAAATACATATGCCCACCCTGaacaaattcataaaaaaaaaaaatgggaaaaatgtcCAGCTTCAATCTGTGACCCATCCACTTGAattcaaaaacataaaagataCACTATGCAAGATTTTGTACAGATTTAAAGcatgtaaaatgaataaacagggaCTGCTTGATTAAGtattctgtaattttacagaaTGTGACTCGATTAGACCAAACTAGACCATGTAACTGGGCAGTAAAGAGCACAGGTGCCACATACAGAATTAAGCATTTATCTAGATTTCCATCCGTCCTTATGGATTTGTCTTATGGTGATTTTCCACTGTATGGTACCTACACTACTCCACAGTACTTGACTTTACTACTAATCTCTACTCTTCTATTTTTGGTACCTCATACCTGGTTTATCTTTCCCCAACCAAGGCGTGtcactatcttttttttttttgtgtggcctTTTGGGTTGCACAAAGTGACgattactttttatatgacaAATTATAATCCCTATTCAGCTGGTCTGAAACCACAAGAGAACAGGAAAGGTGTGG
>TU4378
CTTGTCACTGAGATTCTGCTTAACAGACCCAGTGATttcatgattaataataataataaaaaaggaatgaCTTTTGTctaataaagaatataaaagtTGCCTTATGTGGATTTGAGAAATGTATACACCAtgaccagccataacattagcaccacctGCCTACTACTGTCTATTGAGTAGGTTCTCCACAAGTATCTCCTGTTTTACAACTGCAActaatgcagcatcactaggcagccAATGTGCTCGAAGGAAAGTGACGGATACCCAGCTACAATAAATCAGCTATCAGATATCTGTGCAGGCCAACATCTCAACAACAGAGAACAAGAGaattctctcagactctggctgctaaCGTCAAAGCATCACCATTTACCCACAGCAGATCTTTTTATGTCCTTTAAGTTGAGGTAGGGTCTCAAAGACGGTCACTGGTTCACTGATGAGCGTGGAACTTGAAGTAGTCTGTTTTGGTTGGCACACCCAATTTTAAACCATCTTGCTCATATCCATCCACAGAAATAGGTTTTCCTGGAACCCAAAAAGGTTGTTCTCAGCTGGAACTGAAAAATAGCAGTGTGCAGCTCGTTCTGTAGATGACATATTCTGTGATGTATCTACTGTGTTCAACTAAAACTGGTGCAAACGTGGGCTGGTTCACTGAAAAACAATCTCCAAGGTTCTTAAATATCCAAATGGACTTGTATCGGTCAAAAGGGGCTAAAATTCTTCTTTCTTTGACAATTGCATAGCAGGGAAACCCCACAAGTCTAACCTGACaatttttggagatgttctgaccgtCCAGTCATCTATCCCAACACTTTAGTTCTTGTTATTTTTACTCAGATCTTTATGCTTGCTAACGTTTTTCACTTTTCTCACTTCACCAGTCAGTAGTGCTAATATTATGGTTGACCTGTGTACAGTACAGACCTATAAGCAAATAAACAATAGACAAAGTTAATGTAGCGCCAGTTACATTTCTACATTGTTCTACATTGCAGGTAGTGTAGAttttaattagttgagacagATGATCACATTTCCAGTGCTGAGGTGGCTTCTGTTCATTAAGTTGCTGCTTTAGTGTTATGGGAAGAGTAGGAATGGAGGAACAGCACCATGCTTTAGGGGCAGCTGTTCTAGAACTGCATAATTCTGGAGGCAGAATTGAGAATACAATACAACATGTATTGAGATAATACAACCTGGGGAATATGTGAACAATAATAAACCACTTAGGCCACTCAAAAATACATATGCCCACCCTGaacaaattcataaaaaaaaaaaatgggaaaaatgtcCAGCTTCAATCTGTGACCCATCCACTTGAattcaaaaacataaaagataCACTATGCAAGATTTTGTACAGATTTAAAGcatgtaaaatgaataaacagggaCTGCTTGATTAAGtattctgtaattttacagaaTGTGACTCGATTAGACCAAACTAGACCATGTAACTGGGCAGTAAAGAGCACAGGTGCCACATACAGAATTAAGCATTTATCTAGATTTCCATCCGTCCTTATGGATTTGTCTTATGGTGATTTTCCACTGTATGGTACCTACACTACTCCACAGTACTTGACTTTACTACTAATCTCTACTCTTCTATTTTTGGTACCTCATACCTGGTTTATCTTTCCCCAACCAAGGCGTGtcactatcttttttttttttgtgtggcctTTTGGGTTGCACAAAGTGACgattactttttatatgacaAATTATAATCCCTATTCAGCTGGTCTGAAACCACAAGAGAACAGGTACTAAAAAAAGCATACCTGGTTCCATTTACTGGGTACCCAAAGTTGTCTAATGTGAAATAAGGTCAAGTAGTGATTGTACCATGCAGTGGAAAAGCACCTCTAAATTAAAGTCACCTATCTCTACATGTTCAAAATCCTAAAATCTTCCATAGCACAACTTGAAATGTTagtatacatatttaatcaacAACATCCATACACAGAAACAACATGACTGGCTTTCAGGTGGAGGAGGTGAAGCCGCCTGCTCCGAGGGTGAAGACGTATGCCTGTAACGTCTCTCTATTCTAGCGACTGCAGCATGAGGAGCTGCTTGAGGACTTTCGTCTGGCTGGTTTCTCGTATCTCTCCGGCCAAGAACATCTCGTCCACCACTGTGTACACCTTATAGAAATTGAAGACCAAGTCTAACTCGCAGACATTGTGGAAATATTCGTTCAAAACCTCCACAAAGTTATGAATACCCTCCAGGTAAGCCAGGTTATTGTCCGTGACGTCCACGCAAATACAGAAGTACAAACCAGCATACCGTCTGTAAATGATCTTGAAGTTCCTAAACTCTACAAAGTTGGTGTGCTTGGCATCACGGACAGTGACCACTGCATGCACCTCCTCAATGAGCTTCTGTTTCTCGTCATCATCAAACTGCATGTACCACTTGGCCAGTCTGGTCTTCCCTGCTCGGTTCTGGATGAGGATGAAGCGAATCTGCGAAGAGGAGAGGAAATGAATTGCAGGGCTTTTGTGCAGGTCATTGTGTTTCAGCACATTGAAA

Function

symbol description
ap2s1 Predicted to enable clathrin adaptor activity. Acts upstream of or within habituation. Predicted to be located in membrane. Predicted to be part of AP-2 adaptor complex. Predicted to be active in intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in familial hypocalciuric hypercalcemia 3. Orthologous to human AP2S1 (adaptor related protein complex 2 subunit sigma 1).

NR:

description
PREDICTED: AP-2 complex subunit sigma isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4377 False 2550 lncRNA 0.49 2 13153020 13205546
TU4378 True 2571 lncRNA 0.28 5 13075597 13162587

Neighbor

gene id symbol gene type direction distance location
LOC103023447 LOC108426981,LOC108278228,LOC107380297,LOC103474627,LOC102221837,LOC107746191 coding upstream 32986 13034480 ~ 13042611 (+)
LOC103023132 LOC108426979,LOC108278227,LOC107567275 coding upstream 46792 13003537 ~ 13028805 (+)
trappc4 trappc4,LOC107561742,LOC106612982 coding upstream 282294 12788901 ~ 12793303 (+)
sacs sacs,LOC107670382,LOC107724954 coding upstream 321697 12708209 ~ 12753900 (+)
mipep mipep,LOC107724959,LOC106581117 coding upstream 406828 12641165 ~ 12668769 (+)
npas1 npas1 coding downstream 178431 13383977 ~ 13455473 (+)
prpf8 prpf8,LOC107685080 coding downstream 457900 13663446 ~ 13678351 (+)
LOC103044209 rilp coding downstream 473123 13678669 ~ 13691891 (+)
scarf1 NA coding downstream 486620 13692166 ~ 13704422 (+)
LOC103043284 tspan13 coding downstream 509626 13715172 ~ 13721065 (+)
G3323 NA non-coding upstream 76151 12999045 ~ 12999446 (+)
LOC111197033 NA non-coding upstream 83474 12989585 ~ 12992123 (+)
G3232 NA non-coding upstream 354757 12714618 ~ 12720840 (+)
G3205 NA non-coding upstream 417290 12577080 ~ 12658307 (+)
G3179 NA non-coding upstream 822985 12246977 ~ 12252612 (+)
G3377 tmem160 non-coding downstream 257549 13463095 ~ 13464950 (+)
LOC111188402 NA non-coding downstream 262127 13467673 ~ 13492977 (+)
G3381 NA non-coding downstream 276503 13482049 ~ 13485913 (+)
G3388 pitpna,pitpnaa,LOC107743636,LOC107669737 non-coding downstream 321661 13527207 ~ 13541209 (+)
G3390 NA non-coding downstream 338904 13544450 ~ 13552415 (+)
G3313 sept5b,LOC108425237 other upstream 91328 12982625 ~ 12984269 (+)
G3096 NA other upstream 1148347 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 1651146 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 1786751 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 1796420 11258446 ~ 11279177 (+)
LOC103035587 NA other downstream 1012261 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 1239012 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 1634747 14840293 ~ 14845626 (+)
G3736 NA other downstream 1755627 14961173 ~ 14963583 (+)
G3790 NA other downstream 1833009 15038555 ~ 15038914 (+)

Expression


Co-expression Network