LOC103023447 (LOC108426981,LOC108278228,LOC107380297,LOC103474627,LOC102221837,LOC107746191)


Basic Information

Item Value
gene id LOC103023447
gene name LOC108426981,LOC108278228,LOC107380297,LOC103474627,LOC102221837,LOC107746191
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13034480 ~ 13042611 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260902.3
CTTCAGAGAGCAGCTCCATGTGTAGGATCTCCACCCACGAGTACTCTCACTCCATAGTAATCTAGTGTAGGTATCTAACTCAGTTTGTAGAGTTTCTATGAAGACACTGGCTACACGGATCTTCTCCTGAAACCCCAACAGGACAGCACAGGGCAGTGATCTGTGGAACTACTCGCTACATAGATATGATCCTCTGCTTTGCTGCTCCTGTCCTGGTGGTCTCTTAAGATAGCAGACAGTGGGAGACCCTCTGAGGACTTTTTGATGGTGTTTTCCCGACTCACTCCGctgggagtgtgtgagagatcgGTGTGCAGAGCAGACCCGGCGTGTTAAAATTCAGAATGAATAACCAGCTGATGGCTCCGCCGGTGCCGCCTCACCACCCGAAGCCTCCCCGGCAGTCAGGCTCTGACGAGCGGGCGCTGAAGTGCGTGCTGCTCGGGGACGGAGCCGTGGGGAAGACCAGCCTGGTGGTGAGCTACACGACCAACGGATACCCCACCAAATACGTGCCCACAGCTTTCGACCACTTCTCTGCTGTCGTACAGGTTGATGGACACCCAGTGAGACTGCAACTCTGTGACACTGCCGGACAGgaCGAGTTTGATAAGCTGAGACACTTCTGCTATTCGCGCACAGATGTCCTGCTACTCTGCTTTAGTGTGGTTAGCCCTGCCTCCTTCCAGAACGTGGGCGAGAAATGGGTGCCTGAGATCCGCCGGCGATGCCCTCTGACTCCACTGCTGCTGGTGGGCACACAGTGTGACCTGCGGCAGGACGTTAAAGTGCTAATCGATTTAGCACGGCGGCGAGAATGCCCTGTTCCAGAGCAGGATGCCCGTACTCTTGCAGACAAAGTCGGTGCCGTGACCTACGTCGAATGCTCGGCTCTCACACAGAAGAACTTGAAGGAGGTGTTTGACGCCGCCATTGCTGCCGGCCTTCGGCAGGCAGACAGGCGAGCCAGGCGGGAACGCAAGGTTCGCAGTACAGCTGATAAGATGAAGATGCTCTCCAAGGCCTGGTGGAAGAAATACGTGTGTGTTCAATAGCAAGAAGCAAAGGGGCGACTTCACCGACGCAAATGGACAAAGTGACAAAGAGTGACTCTTGGCTGCTTTAGTGGACGTTGGGTGCCTCAGGCAGATGGACTGCTAATAAGTGACTGAGGAGCTGCTATTGACGTGGAGGTCAGGAGTGTGAGGTGGGAGCAGTGTTGCTTCAGTGACATGTTTACACTGCTATGAGCCATGCTACCGTCCTGGCAGTTTCACCAGCTTTTCTGCTAAGAGCTGTTTTATGAGCTGTGACTGTCCCAGCTGTTCTGAACTCTTTATCTGCTTCAGTTTGGTCAGCAAACAGGTTTACTTGGCTATTGAAAACTCTGTATGCTTGGATATCTCTGAGATTTTCCCCTTGTTCACCAACCAGGTTCTGGTTTTGAATCATGCGCTCCACCTTCCTATGTCACAAgacttgtatttatttactcatGTCAGATTAATGTAgatatgattttgtttttttttattttcacaatgGCACCGACATGCTGGTGAATAGAACCTGCTAATAACACTGGTTATCAACTTAAGATCTGTTCCTAtgttgatttgttttttgtttttttttcgtttcCCGCTCTCTCTAAGTAACGCTATGCCCTAGTTCAAATCAATGGGCTGGTACTTCTTTAGTGGCCACGTCTAAAGTTTGAGGTCACGGTGCCATGATGTTCCTTACTCAGCTCAGTGCTTTGACAGCTGTTGCTGTTGTTGGTGGCCACCCAGTAAATCACTTGTGACTTCTTTGAGTGTTAAGTGCTTCTCGTGTggcacaaaaagaaaacaaagtacTGTACTGGCCAGCTCCCATTTCAGACGCTTCATTGGCATTGGATTAGCTTGGTTAAATAACATCATAAGTAATCCAAGATCCAGTCATGCCTAAATTTACAAAATTTGATCACCTTGGCAACATGATTTACACTGTACTTTGTGTACAGATGGTTTCACAGGGACTGGAAGCTTTTGGGTAGGCCTggcacaattaaaaaatatatattttttgtttgtatagTTGCAAtaaagaatattgtcatttttaaaagtaaattttatgccACATTGTAATGATATggtataataatgcaattacaaaCTGTTTTAATAGCAATGCACTTTTAATTATAAAGAATATTCATcctaactaaataaaacattaataaaatataacaactaaaataaaatactggttCAATCACATTAATTAGCTGTCCTtgctttgaagaaaaaaaaaaaaatgaacaacaggtcagcaaaaatgattgaggtcatgccCAGgcccatatattgtacgataagttgataatataattatcgtgacaggtctacttttgcttgtttgttttattggtaAAGCATTGGTTTTACATACATTTGCCAATGTGGAACAACAGCCTTTATATTTGATCACACTATATTTTTTGTGACATTAATGTTAATGACAAGCCAGCCCAAATGTGCAGTTCCTTTGCTATATtcaaaaaagctttaaatgaaGTGCAGTTGTACTAGTTGTATTGTCAATgagttgatatatatatttgcttctTATTATTCAGAAGCCATTTTGCTCTCAAATGACTGAAGAAAGTTGGAAATTAGCTTTAAGATGTACCGCAAAAATTGATCAAAGCTGAGTCTGATTTTTGTGTACACTTTACTGCTTTAGTGCCATAACTTTATCAGGGTAAATCTGTagatttgtacattttataatgGTATATAATTGTCTCTTTGTTTCTATGTCCCTGTATGATCACCCCTTATGGTACATGTGAGCAAATGAGTGCTTTCTCATGATTATCATGGCAAATAAATTCAGTTCTTTGAATTAAACCTGAAA

Function

NR:

description
PREDICTED: rho-related GTP-binding protein RhoU-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260902.3 True 2910 mRNA 0.43 3 13034480 13042611

Neighbor

gene id symbol gene type direction distance location
LOC103023132 LOC108426979,LOC108278227,LOC107567275 coding upstream 5675 13003537 ~ 13028805 (+)
trappc4 trappc4,LOC107561742,LOC106612982 coding upstream 241177 12788901 ~ 12793303 (+)
sacs sacs,LOC107670382,LOC107724954 coding upstream 280580 12708209 ~ 12753900 (+)
mipep mipep,LOC107724959,LOC106581117 coding upstream 365711 12641165 ~ 12668769 (+)
LOC103047626 LOC103047626,LOC108426971 coding upstream 396221 12623464 ~ 12638259 (+)
LOC103022831 rab4b,LOC103022831,LOC108426982,LOC107567272,LOC107592649,LOC103378089,LOC107699834,LOC100706225 coding downstream 82171 13124782 ~ 13150184 (+)
arhgap35 arhgap35,LOC107670284,LOC107726507,LOC107699836,LOC107574404 coding downstream 143510 13186121 ~ 13330297 (+)
npas1 npas1 coding downstream 341366 13383977 ~ 13455473 (+)
prpf8 prpf8,LOC107685080 coding downstream 620835 13663446 ~ 13678351 (+)
LOC103044209 rilp coding downstream 636058 13678669 ~ 13691891 (+)
G3323 NA non-coding upstream 35034 12999045 ~ 12999446 (+)
LOC111197033 NA non-coding upstream 42357 12989585 ~ 12992123 (+)
G3232 NA non-coding upstream 313640 12714618 ~ 12720840 (+)
G3205 NA non-coding upstream 376173 12577080 ~ 12658307 (+)
G3179 NA non-coding upstream 781868 12246977 ~ 12252612 (+)
G3342 ap2s1 non-coding downstream 32986 13075597 ~ 13205546 (+)
G3377 tmem160 non-coding downstream 420484 13463095 ~ 13464950 (+)
LOC111188402 NA non-coding downstream 425062 13467673 ~ 13492977 (+)
G3381 NA non-coding downstream 439438 13482049 ~ 13485913 (+)
G3388 pitpna,pitpnaa,LOC107743636,LOC107669737 non-coding downstream 484596 13527207 ~ 13541209 (+)
G3313 sept5b,LOC108425237 other upstream 50211 12982625 ~ 12984269 (+)
G3096 NA other upstream 1107230 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 1610029 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 1745634 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 1755303 11258446 ~ 11279177 (+)
LOC103035587 NA other downstream 1175196 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 1401947 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 1797682 14840293 ~ 14845626 (+)
G3736 NA other downstream 1918562 14961173 ~ 14963583 (+)
G3790 NA other downstream 1995944 15038555 ~ 15038914 (+)

Expression


Co-expression Network