G3397


Basic Information

Item Value
gene id G3397
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13581276 ~ 13583208 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4468
TTGGTGCCTAAAGAAGCACTTCTACTCAATTCagttttttgatagagcacatgtgcttttactcaagtctgtctctagtactttatacccCTATATCGCCTATATTTAGCTCAAGGAAAAAAAtttgagaccacttaaaaaattatgagtttctttgattttaccaaattgaacacctctggaatataatcaagagggagatggatgatcacaagccatcacaccaagctaaactgcttgaatttttgcaccaggagtggcataaggttatccaaaagcagtgtgtaagactggtggagaacatgccaagatgcataaaaactgaccaaatattgatttctgaactcttaaaattgtatgaatatgatgttttctttacattatttaaggtctgaaagcttggCATCgttttttgttacttcagccatttctcattttctgcaaataaatgctctaaataatacctattaataataaataaatagcaaactcagagaaactgatttagaaactggagtgatctcttaatttttttccacagctgtataaaCAAAGGCTGTTGGTTCCATTAATTTGGCTAACTACATACTCTGAACTGTTtagataaattatattaagttACAATATTAGCTTACCTTTTGTAGTAAATGTAGGTTATTTGGTTAACACTGAACCAAATCTAATTTAGACTTTACCTGGTTAAACTGATTCAAATATAAAACCACATGACCAAAAATAactttactgttgtttttttgttatggaattattataatttacagGTTTATCTAGTTTTATCCTTAAAATGTAGACACAAGCACCAGTAATCTGATACAATATGCactatattaaaattttaaaataagttttgtAGTGAAGCCATGACAGCTCCAAtaaccatttaaatgccttaaagcctggtttagttagctaaccttgctaaccTAACCTAGGTTCCTCTCAGTGATAGACCACACCACGCTCAAAGACACTTTAAACTCCTTTTAAACCACTAAAAATCTTTCTCTAATGTTTTTAGAATTGTCTACAGTACATGTCCTGTTTATGGTGTACTTATCGATCACAAATTTCCTCCAGTCCGGTTTTAAAGTCAGAGTTTTCGCTGGTAAACAGACCGTGTCCCACCGCTTCactccggctctTTAAAACCGAaacctcgctctgtctctttctctctccgcaAACCGCCAGCCTTTATAACTATAAAACATCCAGTAAGAGCCCCGAACAGCGCTCAGTTAAAGTCCAGCACTGAACAACTCCGTATAACAGCTCCAAAACACCGATAAACTCCACAAATATCCCACTTGTCCGCTCCGTCTCCCGTGTAGATAAACTTCTTCTCACTCAGAACTCAAAACACTCCGCTGATTTTCGGAGCAGCCAGTCACCTGACCACTGATTGGGCAACCCGGGTTGCCAGATAGCACTTATATTACAGATATCACAAATAAAcaataggattttggctcttgctcatgaatattataattttaaaatgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4468 True 1524 lncRNA 0.38 2 13581276 13583208

Neighbor

gene id symbol gene type direction distance location
npas1 npas1 coding upstream 125803 13383977 ~ 13455473 (+)
arhgap35 arhgap35,LOC107670284,LOC107726507,LOC107699836,LOC107574404 coding upstream 250979 13186121 ~ 13330297 (+)
LOC103022831 rab4b,LOC103022831,LOC108426982,LOC107567272,LOC107592649,LOC103378089,LOC107699834,LOC100706225 coding upstream 431092 13124782 ~ 13150184 (+)
LOC103023447 LOC108426981,LOC108278228,LOC107380297,LOC103474627,LOC102221837,LOC107746191 coding upstream 538665 13034480 ~ 13042611 (+)
LOC103023132 LOC108426979,LOC108278227,LOC107567275 coding upstream 552471 13003537 ~ 13028805 (+)
prpf8 prpf8,LOC107685080 coding downstream 80238 13663446 ~ 13678351 (+)
LOC103044209 rilp coding downstream 95461 13678669 ~ 13691891 (+)
scarf1 NA coding downstream 108958 13692166 ~ 13704422 (+)
LOC103043284 tspan13 coding downstream 131964 13715172 ~ 13721065 (+)
LOC103039353 LOC108440382 coding downstream 588856 14172064 ~ 14213314 (+)
G3390 NA non-coding upstream 28861 13544450 ~ 13552415 (+)
G3388 pitpna,pitpnaa,LOC107743636,LOC107669737 non-coding upstream 40067 13527207 ~ 13541209 (+)
LOC111188402 NA non-coding upstream 88299 13467673 ~ 13492977 (+)
G3381 NA non-coding upstream 95363 13482049 ~ 13485913 (+)
G3377 tmem160 non-coding upstream 116326 13463095 ~ 13464950 (+)
G3431 LOC108427003,LOC107582235,LOC107730853 non-coding downstream 164277 13747485 ~ 13750325 (+)
G3501 NA non-coding downstream 544154 14127362 ~ 14128856 (+)
G3502 NA non-coding downstream 547229 14130437 ~ 14131676 (+)
G3507 NA non-coding downstream 558012 14141220 ~ 14142903 (+)
G3509 NA non-coding downstream 560993 14144201 ~ 14144691 (+)
G3313 sept5b,LOC108425237 other upstream 597007 12982625 ~ 12984269 (+)
G3096 NA other upstream 1654026 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 2156825 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 2292430 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 2302099 11258446 ~ 11279177 (+)
LOC103035587 NA other downstream 634599 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 861350 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 1257085 14840293 ~ 14845626 (+)
G3736 NA other downstream 1377965 14961173 ~ 14963583 (+)
G3790 NA other downstream 1455347 15038555 ~ 15038914 (+)

Expression


Co-expression Network