G98377


Basic Information

Item Value
gene id G98377
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 8457618 ~ 8529454 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU132603
AAAAATAGCAGAGAGCAGAATtcacaatcaacaatcaacaattaCAATCAACACATCTGACACTTCTGGCTTCATCTGAAAACCACTAATCTTTTAATCTTTAGAAACGCATATTAAGACATTAAGACATTTTCTGGTCCCATTAAAGGAAACGGTGAGCAGAGACTGAAGGAGAACCTTCAGGacctaatatctaatatatgaacatatactgtatatattactaATAGCTGGTAGGGTATGGTTCTATTGTCAACTTTGAATAAAAGTTGTATGAATAAAATAGTAGCCTATATGTATCATTTCTGTTTGTATAAATCTGACTGTTCTAATCAGCAGGAGGATTAAGGACAACAATTAATGTCACAACAAAGAGGACAATGACCATCTGCTCACAAATGATCTTCTGGGAATCattttacaaatgaacacagactGCATAAGCGTCCACAGCGAGATTGCAGTTCACTGTGGGTTGCTGTAAAGgacatgcaaaacaatgcaaatcaatcattttttttagggTTAGAGGCATAAGCGATTAAACTGGGACCACTGCAAATCTCTTTTGACAGAATCCGTTGTGCGTATCGGGTATTTGTGCATGTGCTTCTCTGTAAGCCCGAGCGTGCTGTgccatgtgtgtgtaagtgtgtgtgtgtaagtgtgtgtgtgtgtgtgtgtgccagaaGGGATTTTAGGGTTCGCTCTGCTGGAGAGGCAGCACTGCCTGGGCTTTACTAAGCTGTAGTGATCCTGAAGCaggcagagagatagagagagagatagagggagagagagatagatagatagagatagagagagattacaACCCTGCGGGATCGGCAGTACCCATCCCAGATGGCCCGGCGGTTCGCTCGTGCCAGCACCACTGGTGCATGATGTAGGCAGAGCTACCAGAGCACTGGAGAGAATTGCTCATGTGTTTGTTTCTGCATGTGCCTGTGAGAATTGGCGTCAGGGTGGCCCGGGCAACAGTGGCACCATATGCATAATCACAGTaaatctgcctttttttttaagactgcaGGGAATGGCTTCATATACTACACCACATACACTACATGTCCAAAACTCATCCAGACAGCTGCTGTGATTAGCGGACTTCGACATCTTCGGATCGGATACATATTGCATCTAaggtaaatacacacatattgcTTTTCAAAGTAAccttaacctttttaaaactCATAATGGTTTGAATGATCACCAACACAATCTCAAAAATGCATCAGTAGGTACTAGGGCCGCACGAGAAATATCGTTTAGGCATCATCATCGCGATGtgtgcatgcgcaatagtcaatATATAATAGtcaatcaaacacgtcatgctTTGAtccttgacacaagaagtagatacacagcgctgtctctgtgtctgtgtgagtgacaggctgctgctgcctgagaagcaggagtaaacatgaggtaactgcatggcctccatccacatggctgggcacgtgcttgtagaCGTGGGCACGTggggaaagctgtgcacctcagtccagcacagttttgtggtgcagatatttccagttacagctgaattcacgcttttaatcccagaaaaacaaaccctcttatttacctttaaaaaaaacaatttaaatgtctaattaaagggctgattactgttgttttgctgttttcctcgggttttgagttgagctcggcactgactcagctcttgattggtccggatgTGAGACAGTGGGCAGGGGGGGatggggctggtgacgtcatgggccctgcattgtttaatatcacgatatatatagccggaaaaaaaaaaaacatatgcaatgtaaaatgtttctaatatgTTGAAGTGCACGAGTGGCCACTATCAGCAGCAGATAAAGGGTTAACTTGCTCTCACAGCCTTCAATCCTGAGGCCagaatatatgtatacatacatactgtacatatgtaAGAGAAGGTAGCCCACGGGGAAATGACTACACTGCAAGCATTTTTAATGTGCTCTCAACTGCCTTATCATTCCAAGCTAATTATTGCTCTTATGGCTGCCCGCAATCAATCAAATCCTCGCTGCAGATGCTGTGTTTTCCAACATCTAGTGCAAATCTTTTCCCAAAGAGTAGAGGATGCTACTGCAGCAAAATGAGGACCAGCTGTCTGGAAtattttggacatatagtgcataaaaaaaaacgaacaaacgaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaagtgtccaatCAGAACTTGAAGAGGTTGATGAAACCTTGTGGAGACACTGAAATGGTGCAGCTTTCGGGATTGTTGGCTGTGCAGGGATGGTTTGTG
>TU132605
AAAAATAGCAGAGAGCAGAATtcacaatcaacaatcaacaattaCAATCAACACATCTGACACTTCTGGCTTCATCTGAAAACCACTAATCTTTTAATCTTTAGAAACGCATATTAAGACATTAAGACATTTTCTGGTCCCATTAAAGGAAACGGTGAGCAGAGACTGAAGGAGAACCTTCAGGacctaatatctaatatatgaacatatactgtatatattactaATAGCTGGTAGGGTATGGTTCTATTGTCAACTTTGAATAAAAGTTGTATGAATAAAATAGTAGCCTATATGTATCATTTCTGTTTGTATAAATCTGACTGTTCTAATCAGCAGGAGGATTAAGGACAACAATTAATGTCACAACAAAGAGGACAATGACCATCTGCTCACAAATGATCTTCTGGGAATCattttacaaatgaacacagactGCATAAGCGTCCACAGCGAGATTGCAGTTCACTGTGGGTTGCTGTAAAGgacatgcaaaacaatgcaaatcaatcattttttttagggTTAGAGGCATAAGCGATTAAACTGGGACCACTGCAAATCTCTTTTGACAGAATCCGTTGTGCGTATCGGGTATTTGTGCATGTGCTTCTCTGTAAGCCCGAGCGTGCTGTgccatgtgtgtgtaagtgtgtgtgtgtaagtgtgtgtgtgtgtgtgtgtgccagaaGGGATTTTAGGGTTCGCTCTGCTGGAGAGGCAGCACTGCCTGGGCTTTACTAAGCTGTAGTGATCCTGAAGCaggcagagagatagagagagagatagagggagagagagatagatagatagagatagagagagattacaACCCTGCGGGATCGGCAGTACCCATCCCAGATGGCCCGGCGGTTCGCTCGTGCCAGCACCACTGGTGCATGATGTAGGCAGAGCTACCAGAGCACTGGAGAGAATTGCTCATGTGTTTGTTTCTGCATGTGCCTGTGAGAATTGGCGTCAGGGTGGCCCGGGCAACAGTGGCACCATATGCATAATCACAGTaaatctgcctttttttttaagactgcaGGGAATGGCTTCATATACTACACCACATACACTACATGTCCAAAACTCATCCAGACAGCTGCTGTGATTAGCGGACTTCGACATCTTCGGATCGGATACATATTGCATCTAaggtaaatacacacatattgcTTTTCAAAGTAAccttaacctttttaaaactCATAATGGTTTGAATGATCACCAACACAATCTCAAAAATGCATCAGTAGGTACTAGGGCCGCACGAGAAATATCGTTTAGGCATCATCATCGCGATGtgtgcatgcgcaatagtcaatATATAATAGtcaatcaaacacgtcatgctTTGAtccttgacacaagaagtagatacacagcgctgtctctgtgtctgtgtgagtgacaggctgctgctgcctgagaagcaggagtaaacatgaggtaactgcatggcctccatccacatggctgggcacgtgcttgtagaCGTGGGCACGTggggaaagctgtgcacctcagtccagcacagttttgtggtgcagatatttccagttacagctgaattcacgcttttaatcccagaaaaacaaaccctcttatttacctttaaaaaaaacaatttaaatgtctaattaaagggctgattactgttgttttgctgttttcctcgggttttgagttgagctcggcactgactcagctcttgattggtccggatgTGAGACAGTGGGCAGGGGGGGatggggctggtgacgtcatgggccctgcattgtttaatatcacgatatatatagccggaaaaaaaaaaaacatatgcaatgtaaaatgtttctaatatgTTGAAGTGCACGAGTGGCCACTATCAGCAGCAGATAAAGGGTTAACTTGCTCTCACAGCCTTCAATCCTGAGGCCagaatatatgtatacatacatactgtacatatgtaAGAGAAGGTAGCCCACGGGGAAATGACTACACTGCAAGCATTTTTAATGTGCTCTCAACTGCCTTATCATTCCAAGCTAATTATTGCTCTTATGGCTGCCCGCAATCAATCAAATCCTCGCTGCAGATGCTGTGTTTTCCAACATCTAGTGCAAATCTTTTCCCAAAGAGTAGAGGATGCTACTGCAGCAAAATGAGGACCAGCTGTCTGGAAtattttggacatatagtgcataaaaaaaaacgaacaaacgaaaaaaaaaaaaaagtaaataaaaccaaaaaaccaAGCATGGAAACCTCGGCACTGCACGGCACAGCCCAGCGCTCATGTTGGGTAGGCAGCCATGAGCTTGGGGATGgatgttaaaggagaaatctggtgtaaatTGGACTTAAAATTAACTTTTGTTAAAATGTGCATCACCATTCATCCCCATCATTCCCTAATTcagtgcttttagccaatgctctcaacaggcttacaatgctagtgataggggatagGGCATAgcattttaaacatgcagaGAAATCTCCTAAATTTCTACCAATGAAGAGCTTATTAATAGTGTGAAagtagtgatttctttgcataggCAAatttatgcccctatcactttCATTGTAAGCACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132603 False 2348 lncRNA 0.42 2 8457618 8529454
TU132605 True 2599 lncRNA 0.42 2 8501593 8529454

Neighbor

gene id symbol gene type direction distance location
fam84b fam84b coding downstream 48369 8406971 ~ 8409249 (-)
LOC103047384 NA coding downstream 187627 8264525 ~ 8269991 (-)
LOC107197658 NA coding downstream 197245 8252651 ~ 8260373 (-)
LOC111193440 NA coding downstream 210091 8242053 ~ 8247527 (-)
LOC111193439 LOC108429926 coding downstream 217185 8234533 ~ 8240433 (-)
nsmce2 nsmce2 coding upstream 73654 8603108 ~ 8606859 (-)
zhx2 zhx2 coding upstream 94848 8624302 ~ 8647582 (-)
LOC103029934 LOC108443716,LOC106606150 coding upstream 183418 8712872 ~ 8721805 (-)
glipr1 NA coding upstream 410673 8940127 ~ 8945629 (-)
LOC103035192 NA coding upstream 419295 8948749 ~ 8993021 (-)
LOC111193401 NA non-coding downstream 17933 8439030 ~ 8439685 (-)
G98363 NA non-coding downstream 70888 8386439 ~ 8386730 (-)
G98362 NA non-coding downstream 82767 8374642 ~ 8374851 (-)
G98358 NA non-coding downstream 101549 8348285 ~ 8356069 (-)
G98335 NA non-coding downstream 179827 8277096 ~ 8277791 (-)
G98407 NA non-coding upstream 14679 8544133 ~ 8544349 (-)
G98408 NA non-coding upstream 18465 8547919 ~ 8548227 (-)
G98410 NA non-coding upstream 46820 8576274 ~ 8576480 (-)
G98519 NA non-coding upstream 193605 8723059 ~ 8723320 (-)
G98520 NA non-coding upstream 194719 8724173 ~ 8724437 (-)
LOC103044427 NA other downstream 649476 7781480 ~ 7808142 (-)
LOC103043934 LOC103043934,LOC108429921 other downstream 678334 7769129 ~ 7779284 (-)
LOC111193437 NA other downstream 748113 7684766 ~ 7709505 (-)
LOC103044954 LOC103044954,LOC108429942,LOC100705775,LOC107699547,LOC107589412,LOC107582081,LOC103388254,LOC107599504,LOC103356523,LOC101077558 other downstream 1606780 6843486 ~ 6850838 (-)
G97793 LOC103046199 other downstream 2434735 6015843 ~ 6022883 (-)
G98533 osbpl8,LOC107656451,LOC107658748 other upstream 246344 8775798 ~ 8795749 (-)
LOC103034868 NA other upstream 372014 8901468 ~ 8914931 (-)
yeats4 yeats4,LOC107555875,LOC107590554,LOC106609801,LOC107717680 other upstream 632947 9162401 ~ 9179368 (-)
LOC103027931 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC107672985,LOC107598403 other upstream 1000182 9529636 ~ 9537670 (-)
LOC103043823 tpi1,tpi1b,LOC107700200 other upstream 1030678 9560132 ~ 9578053 (-)

Expression


Co-expression Network