CI01000012_02507678_02521107 (CNNM1)


Basic Information

Item Value
gene id CI01000012_02507678_02521107
gene name CNNM1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 2507678 ~ 2521107 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_02507678_02521107.mRNA
ATGGCTGCGGATGCTGCGGATGCTCTCCTCCAGCACCGCATCCCCGGACCATGCCTCCTGCCTCTGCTCCTCCTGATCGCCTCCGCTCTCCCCACACTAAGCCACGGGCTGCTGGGCTTCCGACCGGAGGATACGGGAGGAGATCTGTCCGTGCAGGACGGGCTGCTGAAGGCCACCGAAGGGACGCGGTTCATGTTACGCGTGTACTATGCAGCATCCCCGCAGAGGCTCAACCGGACTATCAGCAGCTCCGGCGGCACGGCCGCGCCGTGGATCGCCTTCATAGAGGAACCGGAGCCGGGCAGAGAGGGGCAGGTGCATCCCAAACGCAACTTGTGCGTGGAGGAAAGCGCCAGGAGCTCGGATATAGAGCTCCTCGGCTCTTTCAAGTCAGCCTCCAGTCAAAACTCCATCCTGGTGGAGCTGCTCGCCAAAGACCTCCGGAGAGGAGAGAAAATCAAGTATTACTCCATGTGCGCCTTTGACGGGATCAAGTGGGAGCACTACCGGACGCGCGACTTCTGGCTGGCGGTGGTGGAGCGGCCGCCGCATGCGGACGGGTGGCTGCAAGCGAGTCTGTCGGTGCTGCTGCTGGCGCTGTCCGCGCTCTTCAGCGGGCTGGTGATCAGCATGCTCGCGCTGGACCCGGTGGAGCTCAGAGTGCTGCAGAATAGCGGCACGGACAAGGAGCAAAAGTACGCGCACAAGATCGAATCGGTGCGCAAACACGGCAACTACGTCCTGTGCACCTTGGTGCTGTGCAACGTGCTCACCAACACTTTCCTGGTGGTTTGGATGTGCCAGATCCTCGGGGTGACGTCCGTCTGCACTGCAGCGTGCACTTTTCTCATCTTTTTCATCGGAGAGATCTTTCCGCACTCCGTTGCGTCCAGGCACGGGCTGGCTATCGCGTCCAAGACCGTGTGGCTGACCAAGACGCTGATGCTGCTGACTTTCCCCATCACATATCCCATCAGCAAACTCCTAGACAATATGCTGCACCAGGAAATCAGCAACTTCTACACCCGCGAGAAGTTACTGGCTATGCTGAGAGTTACTGACCCGTATCATGACCTGGTGAAAGAGGAGCTGAACATCATCCAGGGAGCTCTGGAACTCAGGAGCAAAACGGTGGAAGATGTGCTGACCCCTCTAAATGACTGCTTCATGCTGGCCTCGGATGCCATCCTGGACTTCTACACCATGTCAGACGTGATGCAGAGTGGATACACTCGCATTCCTGTGTTTGAGAACGAAAGGTCTAATATTGTTGATATTCTGTTTGTCAAAGATCTGGCATTTGTTGATCCAGATGACTGCACCCCATTAAAAACCATCACTCAGTTCTACAAGCACCCGCTGCACTGTGTCTTTAATGACACCAAACTGGATGCAATGCTGGAACAGTTCAAGAAAGGGAAATCTCATTTGGCTATCGTGCAGAGGGTCAATAATGAAGGAGATGGAGATCCTTTCTACGAAGTCATGGGCATCATCACTCTGGAAGATGTCATCGAGGAAATCATCAAATCTGAGATTGTGGATGAAACGGATCTTTATACTGATAACCGTACGAAGAGGAGAGTGTCTCACCATGAGAGGAAACAGCAAGATTTCTCCATATTTAAACTGTCAGAGAGTGAAATGAAGGTCAAAGTTTCACCACAGCTTCTGCTCGCAACACATCGCTTTCTGGCCACAGAAGTAGAGCCTTTTAAGCCAACGCATCTCTCAGAAAAGATCCTTCTGCGATTGATCAAGCACCCGAGCGTTGTGCAGGAACTCAAGTTTGACGAGAAAAACAAGCGATCACCAAAGCACTACCTCTTCCAGCGTAACAAGCCTGTGGATTATTTTATCCTCATATTGCAGGGTCGAGTCGAGGTAGAGATCGGTAAAGAGGGACTAAAGTTTGAAAATGGGCCGTTCACATACTACGGCTTACCTGCTATCATGACCATCCTACCCACAG

Function

symbol description
cnnm1 Predicted to enable transmembrane transporter activity. Predicted to be involved in ion transport; magnesium ion homeostasis; and transmembrane transport. Predicted to be located in dendrite and neuronal cell body. Predicted to be active in intracellular membrane-bounded organelle and plasma membrane.

NR:

description
cyclin M1b

GO: NA

KEGG:

id description
K16302 CNNM; metal transporter CNNM

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_02507678_02521107.mRNA True 1972 mRNA 0.53 5 2507678 2521107

Neighbor

gene id symbol gene type direction distance location
CI01000012_02389469_02394443 ST3GAL7 coding upstream 113002 2389343 ~ 2394676 (+)
CI01000012_02375605_02376849 MORN4 coding upstream 129899 2375605 ~ 2377779 (+)
CI01000012_02160248_02170508 NA coding upstream 336425 2160055 ~ 2171253 (+)
CI01000012_02010306_02155547 NA coding upstream 351792 2010047 ~ 2155886 (+)
CI01000012_01698932_01719811 NA coding upstream 787571 1697400 ~ 1720107 (+)
CI01000012_02570663_02574866 NKX2.3 coding downstream 49556 2570663 ~ 2574892 (+)
CI01000012_02581291_02583307 NKX3.3 coding downstream 59422 2580529 ~ 2583477 (+)
CI01000012_02641833_02651606 PYROXD2 coding downstream 120726 2641833 ~ 2652145 (+)
CI01000012_02663225_02675005 NA coding downstream 142118 2663225 ~ 2675246 (+)
CI01000012_02687862_02722857 LOXL4 coding downstream 166755 2687862 ~ 2722925 (+)
G70050 NA non-coding upstream 1078 2506343 ~ 2506600 (+)
G70047 NA non-coding upstream 3602 2503858 ~ 2504076 (+)
G69878 NA non-coding upstream 291668 2215773 ~ 2216010 (+)
G69801 NA non-coding upstream 642857 1864531 ~ 1864821 (+)
G69799 NA non-coding upstream 645693 1861646 ~ 1861985 (+)
G70028 NA non-coding downstream 22163 2543270 ~ 2557138 (+)
G70059 NA non-coding downstream 51111 2572218 ~ 2572480 (+)
G70036 NA non-coding downstream 54973 2576080 ~ 2577048 (+)
G70061 NA non-coding downstream 66377 2587484 ~ 2587689 (+)
G70030 NA non-coding downstream 87744 2608851 ~ 2615891 (+)
G68725 NA other upstream 1822822 683523 ~ 684856 (+)
G68660 NA other upstream 1971725 535566 ~ 535953 (+)
CI01000012_00194370_00195347 HCAR1-3 other upstream 2301904 193903 ~ 195676 (+)
G68282 NA other upstream 2447146 26390 ~ 60532 (+)
G70029 NA other downstream 101371 2622478 ~ 2631385 (+)
CI01000012_04424569_04425090 NA other downstream 1899132 4424569 ~ 4425756 (+)
CI01000012_04495631_04501066 NA other downstream 1977346 4495631 ~ 4501066 (+)
CI01000012_05177587_05180517 SRSF5A other downstream 2655788 5176895 ~ 5180970 (+)
G71199 NA other downstream 2892143 5413250 ~ 5416785 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006860 CNNM1 coding NC_007124.7 CM002897.2 40462366 ~ 40499296 (-)