CI01000012_02687862_02722857 (LOXL4)


Basic Information

Item Value
gene id CI01000012_02687862_02722857
gene name LOXL4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 2687862 ~ 2722925 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_02687862_02722857.mRNA
AAGCCTCACCTGTGTGCAATCATGATTCGGGCCATCTGTCCCTTGTGTGTTCTTATCTTCGCGCTCCTCTTTTTGTGCACCGATGCACGTCCCGAAACGCCTGGCCGGTCAAGGCGTGCTCCTGCTGCCAAAGTGCGACTAGCAGGTTTCGGCCACAGAGAAAATGAGGGACGAGTTGAAGTCCTGCACAACGGGACTTGGGGCACCGTTTGCGATGACGAGGTCGACATTAAACTCGCTAATGTTGTTTGCAGGGAACTGGGTTTCCAAAGTGGCATAACATGGGCGCACAGTGCCAAGTATGGAGAGGGAGAGGGCCCCATTTGGATGGATAATGTGAGGTGTGAAGGAACAGAGAAAACTCTAAAAGACTGCAAGTCGAACGGGTGGGGTGTTCATGACTGCAAACACTCTGAGGATCTCGGGGTGGTCTGTAGTCCAGAAAGAAGGCTGGACCAAGTGCATCCTGGAGTCACCAGAAGAGGGCACACCATCGCTCTCAGACCAAATGCAGTCACCTCGAACCGTTGGCAGGACATTTACTCTAGTTCAAGGACACCTGCACATCTCAGACAAGGCAATGGACATTCCCAGGATCATACCAGATGGGATCAATTCTCCAGACAGCAGTTTCATAATCCGTCTGCCAGTAGGGTGAGGATTGAGGAAGTCCGTCTCAAGCCAGTCTTGATGGTTACAAAGAGACGCACTCTTGTCACGGAGGGTGTGGTGGAAGTAAAGCATGCTGGGAGATGGAGACAGGTGTGTGATAAAGGCTGGAGTCTGAATAGCAGCAGAGTTGTGTGTGGGATGCTTGGCTTTCCTGATGCGGAGCAGCCCAACATGAACACCTACAAAAAAATATGGGATAAAAAAGTCAAGGATTCAACAACCAGATTGAGTCAGATGACCAAGAAGAAGGGATTCTGGGTTGAGAAAGTACATTGTCTGGGTACAGAGCCTAGCCTGACGGAGTGCCACGCCCAGCTGTCAATCCCTCGAAGCCCCACCCCCTGTAAGAATGGTCGCCATGCTGTGGCCCGCTGTGTCCCAGGACCGCAGTTTGCTCGTATTTCCTCTGGCAGACCCCAGGCACCTCACCCTGTGCAGCTGTCAGTGCGCCTGAAGGCAGGGCCACGTCTGGGAGAAGGCAGAGTCGAGGTTCTGCGTGAGGGAAAGTGGGGAACTGTGGTTGACCACCTGTGGGACCGTATCTCAGCCAGCGTGGTGTGCAGAGAGCTGGGCTTTGGCACTGCCAAAGAGGCTCTTACCGGAGCATACATGGGTCAAGGGACGGGGCCAATCCACATGAACTCTGTGCAGTGCACTGGCACAGAACGCTCCATTTTGGATTGTTACTTCCAGGAAGTCCCTCCCTGGACATTCAAACATAGCCAGGATGCTTCTGTCAAGTGCTATGTTCCTAAGACAGGCTTGGAAACCACGGTGCGGTTGGCAGGGGGCAGGGACCAGGCCGAGGGTCGTGTGGAGGTGCTCATGGAGGTGGGGGGCAGAAAGCGTTGGGGGACGATTTGCAGTGAGAACTGGGGAATAAATGAAGCCATGGTGGTGTGCAGGCAACTGGGCTTTGGTTTTGCTGCACGTGCCCATCAGGACACATATTATTGGCAAGGAGACCCTGCAGCAGAAGAGGTGTTATTGAGTGGGACTCACTGTGTGGGAACAGAAATGTCCATCCAGCAGTGCCGTCGTAATAATTACGTCCACTGCCCTCGAGGAGGCGGGGCTAAAGCAGCAGGCGTCACCTGTTCTGAAACGGCACCTGACCTGGTTTTGGATACTCAGCTCGTGCAGGAGAGTGCTTACCTGGAAGACAGGCCTCTGCACCTGCTCACCTGTGCACATGAGGAGAACTGCCTCTCCTCCTCTGCCAACCGTATGCAGTGGCCGTACGGGCACCGCCGCCTTCTGCGTTTCTCCTCTCGTATCATGAACTTGGGTAGAGCCGACTTCCGTCCACGCGCCTCGAGAGAGTCCTGGACCTGGCACCAGTGCCACAGGCATTATCACAGCATTGAAGTGTTCACACATTATGACCTCCTCACACTCAACGGAAGCAGAGTGGCCGAAGGACACAAAGCCAGTTTCTGTCTGGAAGACACTTATTGCCCTGATGGACTTCACAAACGCTTTTCATGTTACAATTACGGAGATCAAGGCATTTCAGTGGGTTGCTGGGACACGTACCGCCACGATATTGACTGCCAGTGGATAGACATCACCGATGTGAGACCTGGAGACTATATCATGCAGGTTGAGGTAAATCCGTCCCTGGATATGGCTGAATCAGACTTTATGAACAACGTCATGCGTTGTCGATGTAAATATGATGGACACAGAGTGTTTATGTATGGCTGCCATGCAGGTGATGCCTACAGTGCTGAAATTGAGGATTTATTTGAACATCAGCGTCAGATCAGCAATAACTTCATCTGAGCCTAGTAAAGTGAGGTGAGAGGAGGGGATGTTCATAAATGGGTCCTGGAAATGTGGATTTTTGGACA

Function

symbol description
loxl4 Predicted to enable protein-lysine 6-oxidase activity. Predicted to be involved in collagen fibril organization and peptidyl-lysine oxidation. Predicted to be located in extracellular region and membrane. Predicted to be active in extracellular space. Orthologous to human LOXL4 (lysyl oxidase like 4).

NR:

description
lysyl oxidase-like protein, partial

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K00280 LOXL2_3_4; lysyl oxidase-like protein 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_02687862_02722857.mRNA True 2525 mRNA 0.53 14 2687862 2722925

Neighbor

gene id symbol gene type direction distance location
CI01000012_02663225_02675005 NA coding upstream 12616 2663225 ~ 2675246 (+)
CI01000012_02641833_02651606 PYROXD2 coding upstream 35717 2641833 ~ 2652145 (+)
CI01000012_02581291_02583307 NKX3.3 coding upstream 104385 2580529 ~ 2583477 (+)
CI01000012_02570663_02574866 NKX2.3 coding upstream 112970 2570663 ~ 2574892 (+)
CI01000012_02507678_02521107 CNNM1 coding upstream 166755 2507678 ~ 2521107 (+)
CI01000012_02762547_02790618 CRTAC1B, CRTAC1 coding downstream 39257 2762182 ~ 2791303 (+)
CI01000012_02884547_02903687 SFRP5 coding downstream 161622 2884547 ~ 2903687 (+)
CI01000012_03003359_03003932 NA coding downstream 280434 3003359 ~ 3004007 (+)
CI01000012_03018699_03040471 NA coding downstream 295623 3016198 ~ 3041172 (+)
CI01000012_03198856_03201372 NA coding downstream 475931 3198856 ~ 3201812 (+)
G70030 NA non-coding upstream 71971 2608851 ~ 2615891 (+)
G70061 NA non-coding upstream 100173 2587484 ~ 2587689 (+)
G70036 NA non-coding upstream 110814 2576080 ~ 2577048 (+)
G70059 NA non-coding upstream 115382 2572218 ~ 2572480 (+)
G70028 NA non-coding upstream 130724 2543270 ~ 2557138 (+)
G70106 NA non-coding downstream 83742 2806667 ~ 2817487 (+)
G70140 NA non-coding downstream 116666 2839591 ~ 2845546 (+)
G70157 NA non-coding downstream 124878 2847803 ~ 2847972 (+)
G70156 NA non-coding downstream 125480 2848405 ~ 2848765 (+)
G70165 NA non-coding downstream 184791 2907716 ~ 2908059 (+)
G70029 NA other upstream 56477 2622478 ~ 2631385 (+)
G68725 NA other upstream 2003006 683523 ~ 684856 (+)
G68660 NA other upstream 2151909 535566 ~ 535953 (+)
CI01000012_00194370_00195347 HCAR1-3 other upstream 2482088 193903 ~ 195676 (+)
CI01000012_04424569_04425090 NA other downstream 1697314 4424569 ~ 4425756 (+)
CI01000012_04495631_04501066 NA other downstream 1775528 4495631 ~ 4501066 (+)
CI01000012_05177587_05180517 SRSF5A other downstream 2453970 5176895 ~ 5180970 (+)
G71199 NA other downstream 2690325 5413250 ~ 5416785 (+)
G71218 NA other downstream 2812927 5535852 ~ 5538384 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location