CI01000012_02884547_02903687 (SFRP5)


Basic Information

Item Value
gene id CI01000012_02884547_02903687
gene name SFRP5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 2884547 ~ 2903687 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_02884547_02903687.mRNA
ATGGCAGAGCAGAAGAGGCAGGTGTCTCTGACCCAGGCTGTGACCCTGGTGTTGGTTCTGCTCACCTCAGCTGCTTCAGCAGAGGAGTACGACTACTATAGCTGGCAATCGGACAATTTCCACAACGGCCGCTTCTATGCCAAGCAGCCACAGTGTGTGGATATCCCAGCCGACCTGCGGCTCTGCTACAACGTGGGCTACAAAAAGATGCGCCTGCCAAACCTACTGGACCACGAGACCATGCCTGAGGTCAAGCAGCAGGCGGGCAGCTGGGTGCCACTCCTGGCAAAGCGATGCCACGCTGACACGCAGGTGTTCCTCTGCTCCCTTTTTGCTCCAGTGTGCCTTGACAGGCCCATCTACCCCTGCCGGTCTCTGTGCGAGGCAGTGCGGGACAGCTGCGCCCCGGTCATGGAGACCTATGGCTTTCCCTGGCCAGAGATGCTACAGTGCGAGAAGTTCCCCATCGACAACGATCTGTGCATTCCCATGCAGTTCTCAGCCGGTCTCGCCACTCAGACTCCAGTTTCAAAAGTGTGTCCACCCTGTGACAACGAGTTGAAATCTGACACCATAATGGAGCACTACTGCGCCAGTGATTTTGCACTCAAGATGAAGATTAAAGAGGTGAAAAAGGAAAAAGGCGACCGCAAGCTTATCGCAGCACAAAAGAAGAAGAAGGTTCTGAAGATGGGAATACTGAGGAAGAAAGACCTAAAGAAGCTCACGCTATACATCAAGAATGGAGCGAACTGTCCCTGCTCGCAGCTGGACAATCTGGGGAGCAACTTCCTCATCATGGGCCGCAAAGTGGACCAACAGTTACTGCTCATGTCCATCCACAAGTGGGACAAAAAGAGCAAGGAACTCAAGTTTGCCATTAAATACATGAAATCTCAACAGTGTCCCACCTATCACACTGTCTTCCAG

Function

symbol description
sfrp5 Predicted to enable Wnt-protein binding activity. Acts upstream of with a negative effect on canonical Wnt signaling pathway and non-canonical Wnt signaling pathway. Acts upstream of or within animal organ development; endodermal digestive tract morphogenesis; and regulation of signal transduction. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including anterior neural keel; anterior neural rod; gut; immature eye; and nervous system. Orthologous to human SFRP5 (secreted frizzled related protein 5).

GO:

id name namespace
GO:2000056 regulation of Wnt signaling pathway involved in digestive tract morphogenesis biological_process

KEGG:

id description
K02222 SFRP5; secreted frizzled-related protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_02884547_02903687.mRNA True 930 mRNA 0.53 3 2884547 2903687

Neighbor

gene id symbol gene type direction distance location
CI01000012_02762547_02790618 CRTAC1B, CRTAC1 coding upstream 93244 2762182 ~ 2791303 (+)
CI01000012_02687862_02722857 LOXL4 coding upstream 161622 2687862 ~ 2722925 (+)
CI01000012_02663225_02675005 NA coding upstream 209301 2663225 ~ 2675246 (+)
CI01000012_02641833_02651606 PYROXD2 coding upstream 232402 2641833 ~ 2652145 (+)
CI01000012_02581291_02583307 NKX3.3 coding upstream 301070 2580529 ~ 2583477 (+)
CI01000012_03003359_03003932 NA coding downstream 99672 3003359 ~ 3004007 (+)
CI01000012_03018699_03040471 NA coding downstream 114861 3016198 ~ 3041172 (+)
CI01000012_03198856_03201372 NA coding downstream 295169 3198856 ~ 3201812 (+)
CI01000012_03216865_03217498 NA coding downstream 313178 3216865 ~ 3218142 (+)
CI01000012_03267719_03279187 SLC35F3B, SLC35F3 coding downstream 364032 3267719 ~ 3279437 (+)
G70156 NA non-coding upstream 35782 2848405 ~ 2848765 (+)
G70157 NA non-coding upstream 36575 2847803 ~ 2847972 (+)
G70140 NA non-coding upstream 39001 2839591 ~ 2845546 (+)
G70106 NA non-coding upstream 67060 2806667 ~ 2817487 (+)
G70030 NA non-coding upstream 268656 2608851 ~ 2615891 (+)
G70165 NA non-coding downstream 4029 2907716 ~ 2908059 (+)
G70171 NA non-coding downstream 10196 2913883 ~ 2914108 (+)
G70184 NA non-coding downstream 23971 2927658 ~ 2928016 (+)
G70185 NA non-coding downstream 24479 2928166 ~ 2928396 (+)
G70205 NA non-coding downstream 29348 2933035 ~ 2933306 (+)
G70029 NA other upstream 253162 2622478 ~ 2631385 (+)
G68725 NA other upstream 2199691 683523 ~ 684856 (+)
G68660 NA other upstream 2348594 535566 ~ 535953 (+)
CI01000012_00194370_00195347 HCAR1-3 other upstream 2678773 193903 ~ 195676 (+)
CI01000012_04424569_04425090 NA other downstream 1516552 4424569 ~ 4425756 (+)
CI01000012_04495631_04501066 NA other downstream 1594766 4495631 ~ 4501066 (+)
CI01000012_05177587_05180517 SRSF5A other downstream 2273208 5176895 ~ 5180970 (+)
G71199 NA other downstream 2509563 5413250 ~ 5416785 (+)
G71218 NA other downstream 2632165 5535852 ~ 5538384 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006852 sfrp5 coding NC_007124.7 CM002897.2 39911551 ~ 39947335 (-)