CI01000012_03018699_03040471


Basic Information

Item Value
gene id CI01000012_03018699_03040471
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 3016198 ~ 3041172 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_03018699_03040471.mRNA
ATGTAAAAGCCGAGCCACCCCTGAGAATAACACTCAGTCTCGTTTTCAGTTACCTCTTAAAACTCACCTTGTTTTTCAGACTCGTTGACTTTCATCAGAAGGGAGTTACACTGAGTCTGTGGAAAGAGTGTTTGAGTTTCCTTTTTTAAAAATGTCAAGCAGAAGTACACAGACACGCAGGAGAACTACAAAAGAGGAAAGTAGGTCGCAGGGAGGTGACAGCAAACACTCTGGTCCCCTAACACACACACATAACCACAGCTCTGAGACGACCACTCTGGTCCAGACGTGTAAAAGAGAGTCTGCTCCTGTGTGCTGTGAGAACAGGTTCACATTTCACTCAAATGTGCCAGTATGCAGCACTTCTGGCGTAACATCACAGTGCATTCAGGCACGAGATGATAAGCTGGATTGTAACTTTGAAAGGCAGGACAGTGCAGAAAATGAGGTGGACAGAAATAAATGCTGTACGCTCTGTAACATGTTCTTCACATCTGCCATTGTGGCTCAGTCGCACTACCAGGGCAAAACACACGCTAAGAGAGTTCGCTTGGTGCTGGGGGAGTCGCCAAGTCTGCCCACACCCACAGAGTCGGCCCCGCCCACCCCTCAGACCACAGACCCTCCCCCTCCCTCGTGGCAGCCGCTGACCAATCACGGAGAGGCGGGCAAGTACTGCTGTTTGTGTGGCGCCTGGTTCAACAACCCACTGATGGCACAGCAACACTATGAAGGCAAGAAGCACAAGAGAAATGCGGCGAGGTCACGACTGCTAGAGCAGCTGGCTGGCAGTCTAGATGCCAATGAAAGTACAGGTCAGTCTTCAATATCCTAAGGTGTAAATGTCATGCGACTAATCACATTTTGGAGACACAAAATTTATGTAAATGTAATTTTGTTATGTAATCAATTGATTCCACAAGAATACGCTTCACTAACAATTATACTGAGCAGTGACATCAAACTAGACAAAATGCTTAAGAAACATTTCTTATTATTATCAACATTGAAAACAGTTGTGTTGCTTAATACTTTTGAGAAAACCGTGACACATTTTTTCAGGACTCTTTGTTGAATAGAAAGTTCAAAAGAACAGCATTTATTTGACATAAAAATCTTGTGACCCATTTCATCAATACAGTTACTGTACTTTTGAATGGAGGGGAGAAAGATGGGGCTATAACCTGACCATGCTAAACTGCTAACTCTGACCTCTTGGACTGCTGTTCAAGTTCCATTTTAACAACAAAGATCTAAATCTTGTTTCCTCTTGAGTGAATATACAAACAAAAAGACTAGCTACAAGTATGCAATTCAGAATCCATGCATTTTGTAGCACACGTTTCTTACATGCATCCATAAATCTTTCAGGTCACATACAGTACAGTACTCCCCCTTCCTCTGCTTCCCACAATCGAATCCTGTCAGTGACTTTGTGCTCTTCAAATGCATATTTCACATTGATGTAATCACTAGACATGTTAGTCATAGAGTGTGTGATACAGGTATCTTGACAGATCCTATAAGTCAGTTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_03018699_03040471.mRNA False 1536 mRNA 0.43 5 3018548 3041172

Neighbor

gene id symbol gene type direction distance location
CI01000012_03003359_03003932 NA coding upstream 14541 3003359 ~ 3004007 (+)
CI01000012_02884547_02903687 SFRP5 coding upstream 114861 2884547 ~ 2903687 (+)
CI01000012_02762547_02790618 CRTAC1B, CRTAC1 coding upstream 227245 2762182 ~ 2791303 (+)
CI01000012_02687862_02722857 LOXL4 coding upstream 295623 2687862 ~ 2722925 (+)
CI01000012_02663225_02675005 NA coding upstream 343302 2663225 ~ 2675246 (+)
CI01000012_03198856_03201372 NA coding downstream 157684 3198856 ~ 3201812 (+)
CI01000012_03216865_03217498 NA coding downstream 175693 3216865 ~ 3218142 (+)
CI01000012_03267719_03279187 SLC35F3B, SLC35F3 coding downstream 226547 3267719 ~ 3279437 (+)
CI01000012_03394096_03396897 NA coding downstream 352717 3393889 ~ 3396897 (+)
CI01000012_03414617_03418724 NA coding downstream 373445 3414617 ~ 3419408 (+)
G70151 NA non-coding upstream 35311 2966290 ~ 2983237 (+)
G70205 NA non-coding upstream 85242 2933035 ~ 2933306 (+)
G70185 NA non-coding upstream 90152 2928166 ~ 2928396 (+)
G70184 NA non-coding upstream 90532 2927658 ~ 2928016 (+)
G70171 NA non-coding upstream 104440 2913883 ~ 2914108 (+)
G70195 NA non-coding downstream 67194 3108366 ~ 3208641 (+)
G70196 NA non-coding downstream 214514 3255686 ~ 3303426 (+)
G70289 NA non-coding downstream 264733 3305905 ~ 3310169 (+)
G70186 NA non-coding downstream 283283 3324455 ~ 3330073 (+)
G70188 NA non-coding downstream 292534 3333706 ~ 3344287 (+)
G70029 NA other upstream 387163 2622478 ~ 2631385 (+)
G68725 NA other upstream 2333692 683523 ~ 684856 (+)
G68660 NA other upstream 2482595 535566 ~ 535953 (+)
CI01000012_00194370_00195347 HCAR1-3 other upstream 2812774 193903 ~ 195676 (+)
CI01000012_04424569_04425090 NA other downstream 1379067 4424569 ~ 4425756 (+)
CI01000012_04495631_04501066 NA other downstream 1457281 4495631 ~ 4501066 (+)
CI01000012_05177587_05180517 SRSF5A other downstream 2135723 5176895 ~ 5180970 (+)
G71199 NA other downstream 2372078 5413250 ~ 5416785 (+)
G71218 NA other downstream 2494680 5535852 ~ 5538384 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00003052 zgc:171482,zmat4,LOC107747266,LOC107564682,LOC108443470,LOC107702738,LOC108262817,LOC107728442,LOC107665614 coding CM030139.1 CM030139.1 10420188 ~ 10445204 (-)