CI01000012_03394096_03396897


Basic Information

Item Value
gene id CI01000012_03394096_03396897
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 3393889 ~ 3396897 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_03394096_03396897.mRNA
GTATTAATACCTGATACCATTACCGTACCTACTGTTTTGTAGATAGTAACCATGCTAATAATGTTCAGTATAGTATGTTTTCATGTTATGTCATGTTAAATATTGTAAAATATGTAACTTTAATCAGTACATAGGATATAATTTCTGTTCGTAATCAGGTCTAATTGAGTCTTGAATTTCCATCCTTGAATCAGATCTGCATTTCCCATGGGGCTGCCTGAGGAATTTGCATTTTCTGCAACCTATCGGATGATTGGCAATACACCGAATAAGAGCTGGAATATGTGGCAAATGCGAGATCTGAATGGAAAGGAACAGCTTGCAGTCAGACTCAATGGGGAGGCCCTGTCTGTGGAGTTCTCATACAGAACCCAGGAGAACAGAGTGATGACGGCTTTATTCCCTTACCAAACACATCTCTTCAATTCTCAGTGGCACAACATTTTACTGCTTGTCAAAAAAGGCTCTGTGAGTCTCATAACAGATTGTATGGCAACAGATTCACAGCAGCTGGCACCAAGAGGACAAGTAAACCTAGATGGATTCACACATATTGGAAAACTGAAGGACAATTCAGCAATAGCTGTGCCGTTTGAGCTGCAGTCAATGCTGATTCACTGCAACTTAAACATCCCGCAGAGAGACACATGCGGTGACCTTCCTGCAAGGAGACAGATAGTTGAAAGGGGATTTAGTTGGGTTTCTTGGTCGGGGGGTCCGTCAACCCAACTGATCCGAGAAAGCAGGGGCTTCTGTGTCTTTGGGGAAATCATGGCTCGCGCTGCAGGTGTGCGTGGGCCCTTTTTACTGATTTTGTTGGAGATAACCATCATCTGCACAGCGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_03394096_03396897.mRNA True 846 mRNA 0.43 3 3393889 3396897

Neighbor

gene id symbol gene type direction distance location
CI01000012_03267719_03279187 SLC35F3B, SLC35F3 coding upstream 114452 3267719 ~ 3279437 (+)
CI01000012_03216865_03217498 NA coding upstream 175747 3216865 ~ 3218142 (+)
CI01000012_03198856_03201372 NA coding upstream 192077 3198856 ~ 3201812 (+)
CI01000012_03018699_03040471 NA coding upstream 352717 3016198 ~ 3041172 (+)
CI01000012_03003359_03003932 NA coding upstream 389882 3003359 ~ 3004007 (+)
CI01000012_03414617_03418724 NA coding downstream 17720 3414617 ~ 3419408 (+)
CI01000012_03633636_03709136 LMBRD1 coding downstream 236739 3633636 ~ 3709136 (+)
CI01000012_03736684_03742335 LMBRD1 coding downstream 339739 3736636 ~ 3743066 (+)
CI01000012_03989870_04006406 NA coding downstream 592814 3989711 ~ 4006595 (+)
CI01000012_04052923_04100797 NA coding downstream 655716 4052613 ~ 4101000 (+)
G70322 NA non-coding upstream 7243 3386409 ~ 3386646 (+)
G70321 NA non-coding upstream 8368 3385306 ~ 3385521 (+)
G70192 NA non-coding upstream 27615 3364923 ~ 3366274 (+)
G70188 NA non-coding upstream 49602 3333706 ~ 3344287 (+)
G70186 NA non-coding upstream 63816 3324455 ~ 3330073 (+)
G70350 NA non-coding downstream 82743 3479640 ~ 3480085 (+)
G70327 NA non-coding downstream 152644 3549541 ~ 3614339 (+)
G71038 NA non-coding downstream 428936 3825833 ~ 3965568 (+)
G71041 NA non-coding downstream 432831 3829728 ~ 3874588 (+)
G71124 NA non-coding downstream 623008 4019905 ~ 4020306 (+)
G70029 NA other upstream 762504 2622478 ~ 2631385 (+)
G68725 NA other upstream 2709033 683523 ~ 684856 (+)
G68660 NA other upstream 2857936 535566 ~ 535953 (+)
CI01000012_00194370_00195347 HCAR1-3 other upstream 3188115 193903 ~ 195676 (+)
CI01000012_04424569_04425090 NA other downstream 1023342 4424569 ~ 4425756 (+)
CI01000012_04495631_04501066 NA other downstream 1101556 4495631 ~ 4501066 (+)
CI01000012_05177587_05180517 SRSF5A other downstream 1779998 5176895 ~ 5180970 (+)
G71199 NA other downstream 2016353 5413250 ~ 5416785 (+)
G71218 NA other downstream 2138955 5535852 ~ 5538384 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006847 col9a1b coding NC_007124.7 CM002897.2 39119460 ~ 39160018 (-)