CI01000012_03633636_03709136 (LMBRD1)


Basic Information

Item Value
gene id CI01000012_03633636_03709136
gene name LMBRD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 3633636 ~ 3709136 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_03633636_03709136.mRNA
ATGGCGACGCCTGTAGCGTTACTCTCTGAATCTGTGCTGGGATGGTCTATTTTCACTATCGTTTTACTGGTCATCGTTGCCTTCTGCTGGGTTTATATTCGGAAGTATCAGAGCCGGCAGGAAAGCGAGGTTATCTCCACCATCACAGCGATATGTGCTCTGGCCATTGCGCTCATCACATCAGCTCTTCTTCCTGTGGATATCTTCCTGGTGTCCTTTATGAAGTATCCCAATGGCACTTACAAGGAATGGGCGGCAAACAATGAGACAAGACAGCAGATCGAAAACACAGTTTTGTACGGCTACTACACTCTGTATTCCATCATTCTGTTCTGCGTCTTCCTCTGGATCCCCTTTGTGTACTTCTACTACGAGGAGAAAGATGAAGACAACATCAACAAGTGCTTGCAAGTGAAAAATGCACTGAAGTATACAATAGGATTTGTGATTGTGTGTTCAGCGCTGCTTTTGATTGGAACGTTTGTTCCCTTGGAATCTCCGCCCAACCAGAACTCCACTCAGTGGGAGAAGGTGCAGTATCTGTTCGAGGAGCTGGGCAGTAGCCATGGCCTGGCCGCCCTGTCGTTCTCCATCAGCTCGCTCACCTTGATTGGCATGCTGGCAGTGATCACATACACGGCATACGGGATGTCCGTCCTGCCACTGAATCTGATTAAAGGCACGCGCAGCATCCTGTACGAGCGGCTGGAGAACACAGAAGACACAGAGGAGGTGGAGCACCAAATAGACAAGCTCAAAGCCAAGTGTGCCGATGGGCGTCCTCTCTCTATGAGAGACAGGAGGAACCTCCAGGATCTTGAAGCGAAACTACAGATGTTGCATCGGCGGGGCCGTCACCTGGAGATTGCAGAGAGGAACTGCTGCAATAAAGTGGGCTCTGCTCTCCGACCCATGAAGATCTTGCTCGGGGTCTTCTTCATCCTGGTGGCCCTTTTGTTCTTTGTGACCTTGTTTATTTCCAATCTGGATAAAGCTTTACATTCAGCTGGTATCAGCACTGGATTTATCATCTTTGGGACCAACTTAACCAACCCTCTTAATGAGCTACTGCTGGCGCTGCAACCGGTTTTCCCACTGGACTATGTTCTCATCACCACCATCACCATGTACTTTGTCTTCACCTCCATGGCCGGGATCCGTAACATGGGGATCTGGTTCTTCTGGATACGGCTGTATAAGATCAGGCCTCAGAGAACCCGACCGCAGGCCCTCCTCTTCCTCTGCATGATCCTCCTCCTCATCGTCCTCCACACCAGCTACATGATCTACAGTCTGGCCCCGCAATACGTCATGTATGGCAGCCAGAAATACCTGCTGCAG

Function

symbol description
lmbrd1 Predicted to enable cobalamin binding activity. Predicted to be involved in protein localization to lysosome. Predicted to act upstream of or within insulin receptor internalization. Predicted to be located in clathrin-coated endocytic vesicle; endoplasmic reticulum membrane; and plasma membrane. Predicted to be active in lysosomal membrane. Human ortholog(s) of this gene implicated in methylmalonic aciduria and homocystinuria type cblF. Orthologous to human LMBRD1 (LMBR1 domain containing 1).

GO:

id name namespace
GO:0031419 cobalamin binding molecular_function

KEGG:

id description
K14617 LMBRD1; LMBR1 domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_03633636_03709136.mRNA True 1341 mRNA 0.50 13 3633636 3709136

Neighbor

gene id symbol gene type direction distance location
CI01000012_03414617_03418724 NA coding upstream 214228 3414617 ~ 3419408 (+)
CI01000012_03394096_03396897 NA coding upstream 236739 3393889 ~ 3396897 (+)
CI01000012_03267719_03279187 SLC35F3B, SLC35F3 coding upstream 354199 3267719 ~ 3279437 (+)
CI01000012_03216865_03217498 NA coding upstream 415494 3216865 ~ 3218142 (+)
CI01000012_03198856_03201372 NA coding upstream 431824 3198856 ~ 3201812 (+)
CI01000012_03736684_03742335 LMBRD1 coding downstream 27500 3736636 ~ 3743066 (+)
CI01000012_03989870_04006406 NA coding downstream 280575 3989711 ~ 4006595 (+)
CI01000012_04052923_04100797 NA coding downstream 343477 4052613 ~ 4101000 (+)
CI01000012_04179776_04184166 NA coding downstream 470640 4179776 ~ 4184450 (+)
CI01000012_04209791_04237026 NA coding downstream 499890 4209026 ~ 4237160 (+)
G70327 NA non-coding upstream 19297 3549541 ~ 3614339 (+)
G70350 NA non-coding upstream 153551 3479640 ~ 3480085 (+)
G70322 NA non-coding upstream 246990 3386409 ~ 3386646 (+)
G70321 NA non-coding upstream 248115 3385306 ~ 3385521 (+)
G70192 NA non-coding upstream 267362 3364923 ~ 3366274 (+)
G71038 NA non-coding downstream 116697 3825833 ~ 3965568 (+)
G71041 NA non-coding downstream 120592 3829728 ~ 3874588 (+)
G71124 NA non-coding downstream 310769 4019905 ~ 4020306 (+)
G71134 NA non-coding downstream 333846 4042982 ~ 4044235 (+)
G70029 NA other upstream 1002251 2622478 ~ 2631385 (+)
G68725 NA other upstream 2948780 683523 ~ 684856 (+)
G68660 NA other upstream 3097683 535566 ~ 535953 (+)
CI01000012_00194370_00195347 HCAR1-3 other upstream 3427862 193903 ~ 195676 (+)
CI01000012_04424569_04425090 NA other downstream 711103 4424569 ~ 4425756 (+)
CI01000012_04495631_04501066 NA other downstream 789317 4495631 ~ 4501066 (+)
CI01000012_05177587_05180517 SRSF5A other downstream 1467759 5176895 ~ 5180970 (+)
G71199 NA other downstream 1704114 5413250 ~ 5416785 (+)
G71218 NA other downstream 1826716 5535852 ~ 5538384 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location