CI01000012_03736684_03742335 (LMBRD1)


Basic Information

Item Value
gene id CI01000012_03736684_03742335
gene name LMBRD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 3736636 ~ 3743066 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_03736684_03742335.mRNA
CTATATATGGGTGAACTACCACTTTAACAGTCAATGCTCAAAACGCCCATGTCAACACAATGCCACACAAACAGAGCGAATGAGCAGGCTGCTGGTCTGAATGGCTGTGGTCTTTGGCAGGCGTTCTCCATCAGCAGCGACTGCGATCTGAAGGTGAACCGGGTCAGTGGTGTACACCATGATTTGTTTAGCCAGAGCACTGTTGAGAACCATCTGCCCTGTAATTCAGACCAGTGCACAGTAACAAGATCATACCTGTTCCTGCACAAGTTTTGGTTCTTCAGCACCATCTACTATTTTGGCAACTGGGCTTTCCTTTTGGTCTTTCTCATTGGTTTGGTTGTTTCCTGCTGTAAAGGGAAGAAATCCGTGATTGAAGGGGAAGTTGATGCAGATGATTCAGATCTCAGTGATGATGAATATGTACATTAACTCCTGGTGTAGTTACTACTTATGTCCTGTTTTAACTAGGTTTGGTTGCCAGTCAGAACTGAGATGAAAAAATTATAAAACAGTTTTCTATCTTCTCACAACTCATCTTTCATTCGTCGTTCAGAGAGAGAGAGAAATATTGACGCTCTATAAGAGTCAGTTGAATGTGTTATGATGCCAAATAGATTTTGTGTCACTAGAGGAATTGTCATGTTTAACTGATAGCAGTAGTCTGATATGCTAACCCGTCTCTACTACTGACCCTTACTACTAACTAAGGGTTTATGTGCATGTTATTTTGCATTGCTGTCTGAAATCATCAAATAAGATTTACTCTCTAAAGACGACAAAATTTAGTTTGAAATAAGTTAAAAAGGTACAATTTTTTTTTGTTGATTTACATAAAAGGGTTGAGATTCATATGCTGATTTATTTATTAAGATTTTTTTTAATGCTGTGCATATCTGTGTTTTTTTCTTCCCAAGTGTTTCTGACGTGTGCTTTCTTTAATGTTACTTAAATCTCTGAGGTTGAATTACTGTCATACTGCTTGTGGATTTATTTCACATAAATTTTTATTTTGGATTGTACTTAAAATGACAGGAGAACTTGCAAAGTTTTAGAGAACTGACGCAAGATCAAAAAGTGTGTCAAAATGTATTTATCATATAGTATTGGCCTGTTTTGCAGTTTTTCTGAAATTAATGTTTCTTTTGAAAGATGATCCATTA

Function

symbol description
lmbrd1 Predicted to enable cobalamin binding activity. Predicted to be involved in protein localization to lysosome. Predicted to act upstream of or within insulin receptor internalization. Predicted to be located in clathrin-coated endocytic vesicle; endoplasmic reticulum membrane; and plasma membrane. Predicted to be active in lysosomal membrane. Human ortholog(s) of this gene implicated in methylmalonic aciduria and homocystinuria type cblF. Orthologous to human LMBRD1 (LMBR1 domain containing 1).

GO: NA

KEGG:

id description
K14617 LMBRD1; LMBR1 domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_03736684_03742335.mRNA True 1163 mRNA 0.37 3 3736636 3743066

Neighbor

gene id symbol gene type direction distance location
CI01000012_03633636_03709136 LMBRD1 coding upstream 27500 3633636 ~ 3709136 (+)
CI01000012_03414617_03418724 NA coding upstream 317228 3414617 ~ 3419408 (+)
CI01000012_03394096_03396897 NA coding upstream 339739 3393889 ~ 3396897 (+)
CI01000012_03267719_03279187 SLC35F3B, SLC35F3 coding upstream 457199 3267719 ~ 3279437 (+)
CI01000012_03216865_03217498 NA coding upstream 518494 3216865 ~ 3218142 (+)
CI01000012_03989870_04006406 NA coding downstream 246645 3989711 ~ 4006595 (+)
CI01000012_04052923_04100797 NA coding downstream 309547 4052613 ~ 4101000 (+)
CI01000012_04179776_04184166 NA coding downstream 436710 4179776 ~ 4184450 (+)
CI01000012_04209791_04237026 NA coding downstream 465960 4209026 ~ 4237160 (+)
CI01000012_04266133_04266370 NA coding downstream 523067 4266133 ~ 4267426 (+)
G70327 NA non-coding upstream 122297 3549541 ~ 3614339 (+)
G70350 NA non-coding upstream 256551 3479640 ~ 3480085 (+)
G70322 NA non-coding upstream 349990 3386409 ~ 3386646 (+)
G70321 NA non-coding upstream 351115 3385306 ~ 3385521 (+)
G70192 NA non-coding upstream 370362 3364923 ~ 3366274 (+)
G71038 NA non-coding downstream 82767 3825833 ~ 3965568 (+)
G71041 NA non-coding downstream 86662 3829728 ~ 3874588 (+)
G71124 NA non-coding downstream 276839 4019905 ~ 4020306 (+)
G71134 NA non-coding downstream 299916 4042982 ~ 4044235 (+)
G70029 NA other upstream 1105251 2622478 ~ 2631385 (+)
G68725 NA other upstream 3051780 683523 ~ 684856 (+)
G68660 NA other upstream 3200683 535566 ~ 535953 (+)
CI01000012_00194370_00195347 HCAR1-3 other upstream 3530862 193903 ~ 195676 (+)
CI01000012_04424569_04425090 NA other downstream 677173 4424569 ~ 4425756 (+)
CI01000012_04495631_04501066 NA other downstream 755387 4495631 ~ 4501066 (+)
CI01000012_05177587_05180517 SRSF5A other downstream 1433829 5176895 ~ 5180970 (+)
G71199 NA other downstream 1670184 5413250 ~ 5416785 (+)
G71218 NA other downstream 1792786 5535852 ~ 5538384 (+)

Expression


Co-expression Network