CI01000012_03989870_04006406


Basic Information

Item Value
gene id CI01000012_03989870_04006406
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 3989711 ~ 4006595 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_03989870_04006406.mRNA
CTACAAAAAAAAAAAAAAAAAGTCCCAAACACCCACAGCAAATAACATGTGCCTATAATTATAACACAATATCTTCTCAAGGCATCTTGTTGTTTACCCCCCATGTCTTACCTAACATACTAAATTTAGCACTATTAGATTGAAACCTGTGCTGAGAAAATGACCTTAAATGAGATTTTGAGAACATGTTTAATTTTATTCACCCCCTCTGCTTCTCATTCTGCACACTTGTGGTGTTCGCTCGAGCCATTGCTGAGTTTGTTAGCGAATTTTAAATCAAGGCGTTTCTTCCCCAGCAGTGCTCCTGTTTTTCAGAGACAATGCTCCAGTGCCACAAGAATCCTCTGGGTCTTTCGTCCTTTTCCTTTGAACACTACACCAACCACTGATCCCTTGGCTGCCCCAGACCTCCAACACGGTCTATGCAAATGTTCAACCAGAAGCTGCCCTCACCATACGGATGAGAGACCAAATGCATCTGAAAGTATCAGCGTTTCTCACAAGAGGCCGAAACGGTCCCTTGAACGGGCATATGGCGGCAGCAGATGTGGCTGTTTGGAGGTGAAAGGTGATCCCACGGGCTCTCGTTTTGAGACTACGGCAATTGGAGCATCCATCACTCACCTTACATCAGGTACCACAGAGCCCACCAGAAAGCTTGCCTGTGACAAGATGGCCGCCGGTGATGACGTTAGAGACTCCGCCCCCTGCGGTGGCTGCACACGAGAGAGGTTGATGAATGCCACCCAGGAACTGAAAGATGAAAACTTTGAGCTGTCGGGGAACATTTTGGATGGCGTGGTTGACAGGGCAAACGTGGCAGAGCCATATCACATGCTGCTCTCAGCAGCGGGTCCAGAGACATGCTCACCGCCACCAATTAAATGCAGCCTGCGATCACCTTGGATGGGCACAGGGCAGTGGTCTGTACAAGCGTGCTGTGTTCTGACAAATAATAATTAGCCTCAGTCTACGAGAGCATGAGACCAAGGAGAACAGATGTAAGCAATCTACAAGCACACTGATGTTAATACTCAAGTGCGTTTACATGCACTTTTAAAGCTCGATTTCAAGGAATTACGCCTGCTAATGGTGTTTTTTAACTGAACATGCTATCTGAATTATTTTAACATCGATCTCATCTGGCTTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_03989870_04006406.mRNA True 1152 mRNA 0.46 5 3989711 4006595

Neighbor

gene id symbol gene type direction distance location
CI01000012_03736684_03742335 LMBRD1 coding upstream 246645 3736636 ~ 3743066 (+)
CI01000012_03633636_03709136 LMBRD1 coding upstream 280575 3633636 ~ 3709136 (+)
CI01000012_03414617_03418724 NA coding upstream 570303 3414617 ~ 3419408 (+)
CI01000012_03394096_03396897 NA coding upstream 592814 3393889 ~ 3396897 (+)
CI01000012_03267719_03279187 SLC35F3B, SLC35F3 coding upstream 710274 3267719 ~ 3279437 (+)
CI01000012_04052923_04100797 NA coding downstream 46018 4052613 ~ 4101000 (+)
CI01000012_04179776_04184166 NA coding downstream 173181 4179776 ~ 4184450 (+)
CI01000012_04209791_04237026 NA coding downstream 202431 4209026 ~ 4237160 (+)
CI01000012_04266133_04266370 NA coding downstream 259538 4266133 ~ 4267426 (+)
CI01000012_04285964_04292319 NA coding downstream 278999 4285594 ~ 4293775 (+)
G71038 NA non-coding upstream 24143 3825833 ~ 3965568 (+)
G71041 NA non-coding upstream 115123 3829728 ~ 3874588 (+)
G70327 NA non-coding upstream 375372 3549541 ~ 3614339 (+)
G70350 NA non-coding upstream 509626 3479640 ~ 3480085 (+)
G70322 NA non-coding upstream 603065 3386409 ~ 3386646 (+)
G71124 NA non-coding downstream 13310 4019905 ~ 4020306 (+)
G71134 NA non-coding downstream 36387 4042982 ~ 4044235 (+)
G71145 NA non-coding downstream 61018 4067613 ~ 4067833 (+)
G71152 NA non-coding downstream 81274 4087869 ~ 4088242 (+)
G70029 NA other upstream 1358326 2622478 ~ 2631385 (+)
G68725 NA other upstream 3304855 683523 ~ 684856 (+)
G68660 NA other upstream 3453758 535566 ~ 535953 (+)
CI01000012_00194370_00195347 HCAR1-3 other upstream 3783937 193903 ~ 195676 (+)
CI01000012_04424569_04425090 NA other downstream 413644 4424569 ~ 4425756 (+)
CI01000012_04495631_04501066 NA other downstream 491858 4495631 ~ 4501066 (+)
CI01000012_05177587_05180517 SRSF5A other downstream 1170300 5176895 ~ 5180970 (+)
G71199 NA other downstream 1406655 5413250 ~ 5416785 (+)
G71218 NA other downstream 1529257 5535852 ~ 5538384 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location