CI01000012_04285964_04292319


Basic Information

Item Value
gene id CI01000012_04285964_04292319
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4285594 ~ 4293775 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_04285964_04292319.mRNA
CTACAAAATGCCCTGAATGCACGTACAATCACCATATGCCAACTGAGTGTCATTTTCCAGAACTTCCTCCTTAAGTTTTAAAGATTCAAATAATTGAACCAATCTTTAAAAAAATCCAGTAAGTATTTTGAAAATGTTTTATATGCCAACAAACTCTGTTAATGAGACATTTCTCAGTTTGCTCGCCATCTGTGTGGCAGCGCTTTCACAAGCTTAGCTGACCATATGTCTGTCATTAATTATATTTTTCCTTTTGAATATTTGCTTTTTTGATGGGCTCAAGGATGTGGCTCTGAAAGTCGTAGCCTTCTGTTCAACCTTTTAAAGGGACATGTTTTTTAGAGAATAAAAACATCTGATTCTCTGTGCAATGTTTAAAAGAGGAATGCTTTTATTCAGCTGCCTGCCAGGTTTTGTGGGAGATTTCTGTGAGGTAGAGATGAATGAATGCTGTTCTGAGCCGTGCTTTAATGGGGCCATCTGCCAAGACCTCATCAATGGCTACCAATGTCACTGTCGACCAGGTTGGACAGGCCTTCACTGTGAAGATGACATTAATGAGTGCTTGCTGCAACCATGCAACCAGGGAATGTGCATCCAGAATGAGCCTGGCCATGGCTACACCTGCTTCTGTCGGCCCGGATTTGTGGGGGAAAACTGTGAATATAATTATGATGACTGCTTGATCCAATCATGCCCTGATGGATTTTCATGTAAGGATGGCATCAACAATGTTAGCTGTGTCCCTGTGAAGACAGACACGTCCTTTGTTCCTCCCATCTTGGTCGTCTCGTGGAGTACCATCCACCCCAGCTTAGAGTTACAACCCACTATAGTACCTGTGGAGAACTTGCAAAGCACTGAGCAGCCGACAGGTTGGTAGACCGCATATGCAATATTTTGTATTGTAAAACTGCATTATGCAATATTTTGTACATTTATAATACTATGTATTTTTAGCAGCCTCATAAAAACTTAAAGGCCATATTATGCCCTTTTACAGGGGATCTACTAGAATAGGATTGCATGCTTGAATGTTATACATTATTTTTCACATATTTTATATATTTTTTCGCACCTCATTTCCCAGTCTTTCAGTAACGCTCTGTTTAGTTCCTGTCTTTATGAAGCCCCTCTTATCGAAAAGCACATTGTGCCCTGAATGGTCGGCTGGACCAGAGTGTTGTGATTGGTTAACAGCTTCAAGCCTGTTTCGGAAATATCAGGCCACTTACCATAACCGTGAGAGTAAACAGGCTACTAACGCAACTTAACCAGGCCTCGCCCACTTTTTTCATATGCCTTGGTTGGGAATTATTTAAAGGTACACTATGTAATGTTTGGGCTTCTAGCGGTTAAAAAAAAAAAAAAAAACTGCATGTATTTTGCAGAAGAACATTGTTTTGGTTGTGCTTCAGCTCTGTGTGACTGTTCGGCTGAATATGGTTCTTTCTCATAACTAAAAAAGAGAGAGATTATCTTATAGATATAACCAGTTTAGATGGAAAGGATCTCAAGCTGACTAGCAGAAGACGTTACTGTAGCTATACCCTTTAATAGACACGATACTTCCTTGAAAATAAATTCCAGCGCTGCGCTACAACAACCCATAATGAAATGAACCTTCACAATAGATGCTTTGCAATGAACTCTACTTATGGCAATTTATCTGTTCAATAAAATACCTTACTCGCCTATCGAGTAATAAAAACGCCATCTCTGCATTACTTTTACAACATTTCAAATCCCTCAGTTCTCACCATCTCCGAAAAGCCAAGCCAATGTTGATTCTTGTTTTATTACGAGCTCTGTCGTGATCTCTTTTTGCCAGCAGACTCTCCTTTGTTCTGCGTTTTCTTTTTCTTTTTTTCCCTTAAACGGGTGATTCTCCGGAGGTTGGAGATTTAGCATGCTCCATATCCACCTTTCTCTCTCATTATGAGAACTAACTTATACCACTCCCACACCATACATGCTTAAAAGTAGCCGAAGCAACTTTTCTCTGTTTACAGATATGACAAGATACGTGACGCAAGTACGCAATTTCCCATGAAAACCATCCTGCCCGGTCTAAAATATAAACACTTATAATACAGTAGGCATACCAAAGTGAATCAGGGTAAGACAAAATTTTACATTATAATATTTAAATTTTGTTAATTTTGAACAACAAAAGAAAACTAAAGACTACAGTTGCGGCACTTCAGGGATTTCAGAAACATTGCTTACTAATATAGAGAATTTTGCAGACCTTTTTAATTCTCAAACAGCAACATTACACACTAAAGAAAGTTGAAAATGTAAAAAAGTATTATAGGTCCTCTTTAAGTCTTACAGGA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K19601 EYS; protein eyes shut

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_04285964_04292319.mRNA True 2339 mRNA 0.39 3 4285594 4293775

Neighbor

gene id symbol gene type direction distance location
CI01000012_04266133_04266370 NA coding upstream 18168 4266133 ~ 4267426 (+)
CI01000012_04209791_04237026 NA coding upstream 48434 4209026 ~ 4237160 (+)
CI01000012_04179776_04184166 NA coding upstream 101144 4179776 ~ 4184450 (+)
CI01000012_04052923_04100797 NA coding upstream 184594 4052613 ~ 4101000 (+)
CI01000012_03989870_04006406 NA coding upstream 278999 3989711 ~ 4006595 (+)
CI01000012_04371425_04373907 NA coding downstream 77650 4371425 ~ 4373991 (+)
CI01000012_04386557_04402516 NA coding downstream 92428 4386203 ~ 4402975 (+)
CI01000012_04424569_04425090 NA coding downstream 130794 4424569 ~ 4425756 (+)
CI01000012_04436374_04437448 NA coding downstream 141505 4435280 ~ 4437599 (+)
CI01000012_04488201_04489863 NA coding downstream 194426 4488201 ~ 4489897 (+)
G71305 NA non-coding upstream 46188 4239125 ~ 4239406 (+)
G71158 NA non-coding upstream 175318 4109941 ~ 4110276 (+)
G71156 NA non-coding upstream 178472 4106835 ~ 4107122 (+)
G71152 NA non-coding upstream 197352 4087869 ~ 4088242 (+)
G71145 NA non-coding upstream 217761 4067613 ~ 4067833 (+)
G71375 NA non-coding downstream 53029 4346804 ~ 4347380 (+)
G71238 NA non-coding downstream 187863 4481638 ~ 4505484 (+)
G71239 NA non-coding downstream 235581 4529356 ~ 4585221 (+)
CI01000012_04551570_04571150 SGPP1 non-coding downstream 251089 4551169 ~ 4571339 (+)
G71442 NA non-coding downstream 347762 4641537 ~ 4641848 (+)
G70029 NA other upstream 1654209 2622478 ~ 2631385 (+)
G68725 NA other upstream 3600738 683523 ~ 684856 (+)
G68660 NA other upstream 3749641 535566 ~ 535953 (+)
CI01000012_00194370_00195347 HCAR1-3 other upstream 4079820 193903 ~ 195676 (+)
CI01000012_04495631_04501066 NA other downstream 204678 4495631 ~ 4501066 (+)
CI01000012_05177587_05180517 SRSF5A other downstream 883120 5176895 ~ 5180970 (+)
G71199 NA other downstream 1119475 5413250 ~ 5416785 (+)
G71218 NA other downstream 1242077 5535852 ~ 5538384 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001719 NA coding CM030143.1 CM030143.1 13672581 ~ 13674756 (+)