RNA id: CI01000012_04285964_04292319.mRNA


Basic Information

Item Value
RNA id CI01000012_04285964_04292319.mRNA
length 2339
RNA type mRNA
GC content 0.39
exon number 3
gene id CI01000012_04285964_04292319
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4285594 ~ 4293775 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTACAAAATGCCCTGAATGCACGTACAATCACCATATGCCAACTGAGTGTCATTTTCCAGAACTTCCTCCTTAAGTTTTAAAGATTCAAATAATTGAACCAATCTTTAAAAAAATCCAGTAAGTATTTTGAAAATGTTTTATATGCCAACAAACTCTGTTAATGAGACATTTCTCAGTTTGCTCGCCATCTGTGTGGCAGCGCTTTCACAAGCTTAGCTGACCATATGTCTGTCATTAATTATATTTTTCCTTTTGAATATTTGCTTTTTTGATGGGCTCAAGGATGTGGCTCTGAAAGTCGTAGCCTTCTGTTCAACCTTTTAAAGGGACATGTTTTTTAGAGAATAAAAACATCTGATTCTCTGTGCAATGTTTAAAAGAGGAATGCTTTTATTCAGCTGCCTGCCAGGTTTTGTGGGAGATTTCTGTGAGGTAGAGATGAATGAATGCTGTTCTGAGCCGTGCTTTAATGGGGCCATCTGCCAAGACCTCATCAATGGCTACCAATGTCACTGTCGACCAGGTTGGACAGGCCTTCACTGTGAAGATGACATTAATGAGTGCTTGCTGCAACCATGCAACCAGGGAATGTGCATCCAGAATGAGCCTGGCCATGGCTACACCTGCTTCTGTCGGCCCGGATTTGTGGGGGAAAACTGTGAATATAATTATGATGACTGCTTGATCCAATCATGCCCTGATGGATTTTCATGTAAGGATGGCATCAACAATGTTAGCTGTGTCCCTGTGAAGACAGACACGTCCTTTGTTCCTCCCATCTTGGTCGTCTCGTGGAGTACCATCCACCCCAGCTTAGAGTTACAACCCACTATAGTACCTGTGGAGAACTTGCAAAGCACTGAGCAGCCGACAGGTTGGTAGACCGCATATGCAATATTTTGTATTGTAAAACTGCATTATGCAATATTTTGTACATTTATAATACTATGTATTTTTAGCAGCCTCATAAAAACTTAAAGGCCATATTATGCCCTTTTACAGGGGATCTACTAGAATAGGATTGCATGCTTGAATGTTATACATTATTTTTCACATATTTTATATATTTTTTCGCACCTCATTTCCCAGTCTTTCAGTAACGCTCTGTTTAGTTCCTGTCTTTATGAAGCCCCTCTTATCGAAAAGCACATTGTGCCCTGAATGGTCGGCTGGACCAGAGTGTTGTGATTGGTTAACAGCTTCAAGCCTGTTTCGGAAATATCAGGCCACTTACCATAACCGTGAGAGTAAACAGGCTACTAACGCAACTTAACCAGGCCTCGCCCACTTTTTTCATATGCCTTGGTTGGGAATTATTTAAAGGTACACTATGTAATGTTTGGGCTTCTAGCGGTTAAAAAAAAAAAAAAAAACTGCATGTATTTTGCAGAAGAACATTGTTTTGGTTGTGCTTCAGCTCTGTGTGACTGTTCGGCTGAATATGGTTCTTTCTCATAACTAAAAAAGAGAGAGATTATCTTATAGATATAACCAGTTTAGATGGAAAGGATCTCAAGCTGACTAGCAGAAGACGTTACTGTAGCTATACCCTTTAATAGACACGATACTTCCTTGAAAATAAATTCCAGCGCTGCGCTACAACAACCCATAATGAAATGAACCTTCACAATAGATGCTTTGCAATGAACTCTACTTATGGCAATTTATCTGTTCAATAAAATACCTTACTCGCCTATCGAGTAATAAAAACGCCATCTCTGCATTACTTTTACAACATTTCAAATCCCTCAGTTCTCACCATCTCCGAAAAGCCAAGCCAATGTTGATTCTTGTTTTATTACGAGCTCTGTCGTGATCTCTTTTTGCCAGCAGACTCTCCTTTGTTCTGCGTTTTCTTTTTCTTTTTTTCCCTTAAACGGGTGATTCTCCGGAGGTTGGAGATTTAGCATGCTCCATATCCACCTTTCTCTCTCATTATGAGAACTAACTTATACCACTCCCACACCATACATGCTTAAAAGTAGCCGAAGCAACTTTTCTCTGTTTACAGATATGACAAGATACGTGACGCAAGTACGCAATTTCCCATGAAAACCATCCTGCCCGGTCTAAAATATAAACACTTATAATACAGTAGGCATACCAAAGTGAATCAGGGTAAGACAAAATTTTACATTATAATATTTAAATTTTGTTAATTTTGAACAACAAAAGAAAACTAAAGACTACAGTTGCGGCACTTCAGGGATTTCAGAAACATTGCTTACTAATATAGAGAATTTTGCAGACCTTTTTAATTCTCAAACAGCAACATTACACACTAAAGAAAGTTGAAAATGTAAAAAAGTATTATAGGTCCTCTTTAAGTCTTACAGGA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K19601 EYS; protein eyes shut

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81287 lncRNA upstream 46188 4239125 ~ 4239406 (+) True G71305
TU81127 lncRNA upstream 175318 4109941 ~ 4110276 (+) True G71158
TU81125 lncRNA upstream 178472 4106835 ~ 4107122 (+) True G71156
TU81121 lncRNA upstream 197352 4087869 ~ 4088242 (+) True G71152
TU81114 lncRNA upstream 217761 4067613 ~ 4067833 (+) True G71145
TU81357 lncRNA downstream 53029 4346804 ~ 4347380 (+) True G71375
TU81218 lncRNA downstream 187863 4481638 ~ 4505484 (+) True G71238
TU81219 lncRNA downstream 235581 4529356 ~ 4585221 (+) True G71239
TU81195 lncRNA downstream 251089 4544864 ~ 4547096 (+) True G71215
TU81424 lncRNA downstream 347762 4641537 ~ 4641848 (+) True G71442
CI01000012_04266133_04266370.mRNA mRNA upstream 18168 4266133 ~ 4267426 (+) True CI01000012_04266133_04266370
CI01000012_04209791_04237026.mRNA mRNA upstream 48434 4209026 ~ 4237160 (+) True CI01000012_04209791_04237026
CI01000012_04179776_04184166.mRNA mRNA upstream 101144 4179776 ~ 4184450 (+) True CI01000012_04179776_04184166
CI01000012_04052923_04100797.mRNA mRNA upstream 184594 4052613 ~ 4101000 (+) False CI01000012_04052923_04100797
CI01000012_03989870_04006406.mRNA mRNA upstream 278999 3989711 ~ 4006595 (+) True CI01000012_03989870_04006406
CI01000012_04371425_04373907.mRNA mRNA downstream 77650 4371425 ~ 4373991 (+) True CI01000012_04371425_04373907
CI01000012_04386557_04402516.mRNA mRNA downstream 92428 4386203 ~ 4402975 (+) True CI01000012_04386557_04402516
CI01000012_04424569_04425090.mRNA mRNA downstream 130794 4424569 ~ 4425756 (+) False CI01000012_04424569_04425090
CI01000012_04436374_04437448.mRNA mRNA downstream 141505 4435280 ~ 4437599 (+) True CI01000012_04436374_04437448
CI01000012_04488201_04489863.mRNA mRNA downstream 194426 4488201 ~ 4489897 (+) True CI01000012_04488201_04489863
TU79850 other upstream 1654209 2622478 ~ 2631385 (+) True G70029
TU78809 other upstream 2587358 1697400 ~ 1698236 (+) True CI01000012_01698932_01719811
TU78309 other upstream 3600738 683523 ~ 684856 (+) False G68725
TU78310 other upstream 3600806 683523 ~ 684788 (+) True G68725
TU78307 other upstream 3600898 683523 ~ 684696 (+) False G68725
TU81174 other downstream 126464 4420239 ~ 4420494 (+) True G71194
TU81162 other downstream 204678 4498453 ~ 4500089 (+) True CI01000012_04495631_04501066
TU81129 other downstream 883120 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81130 other downstream 883120 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81131 other downstream 883120 5178778 ~ 5179220 (+) True G71159

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00001719 True 549 mRNA 0.51 3 CM030143.1 13672581 ~ 13674756 (+)