CI01000012_04266133_04266370


Basic Information

Item Value
gene id CI01000012_04266133_04266370
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4266133 ~ 4267426 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_04266133_04266370.mRNA
TTTCCAGTGCAACTGTGTCCCCGGATATTTCGGAATGCTTTGCAACCTGGACATAAACGAATGTGACGCTTCCCCCTGCCTCCATGACTCTGTGTGCATCAACAAACCTGGAGGATTCATATGTGTCTGCCGTGCTGGCTTCTCAGGTACGTCCCCCTCGGTCAGAGCCCGAGACACAAAATCAATGAGAGAAACCAGGGCTTATCGTGTCTACAAGGGCTACGTTCCCCCAGCCTGACAGATTCTTAGTGGAAAGAACACACAAATAGCTCATCAGCACATTTACCACTTTAATTAGATCTCACACTCCCACCTATATCTGCACACACACACTCACATACACAGATTCACCTTGAGTTAACTAAACACCTCCTCTTCATCCTCTGCATTTTAATCAAGTACTTCCTTGTTTCCTCCGCAGTTCTTTTTTTCTTTCACTATTTTCCTATTTCCCCAGGGTGGTCTCATCCTTGTACATTGGGTATTCATTCATTTTTGTATGTTTGGATAGGCACAGATTTGTACAATATCAACATATTGACAGCATCTAATATGCAAACACTTTACAGACATACAAATCTTTACGAATCTTCTGAAAGCTTTTAGAGCTGAACTTACAGGTGAGTAAGTTTAGTACTCAGAATCAAGCCTATATCCAGGCTCTGCTTTCTTAGTAAATGATGGGGCATTAAAAAAACGATAAAACATTTTTAAATGCCAAGTTTACTTATAAATGAAATCCAGATTGTATGTTTTTGCACGCCCAATATACTGTAAAAAGTTCCCTTGAGGAGATATTTCTACCTGATCTAAACCTTAAAGGGATAGTTCACCCAAAAATGAAAATTCTTTCATCATTTACTCACCCTCAAGTTGTTCCTGTATTAATTTCTTCACAAAAGAGATACACAAAAGAGATATTTTGAAGAATATGGGTAACCAAACAATATGGCCCTTCAACTGTTTAGTTACTGACATTCTTCAAAATGTCTTCTTTTGTGTTCAGCAAAAGAAAGACATTCATACAGGTTTGGGACAACTTAAGGTTGATTAAAATGATGACAGAATTTTCGGTAACACTTTATTTTAGGGTCTTTTAACTAGTTCAGTTTCAGGTTCAGGTTCCTTTATTTTATACCCGTAGGTAAATTAGGTTTCAGTGATCAAGTTCGGGCATTTCCCATACATATATATCAGCCTACTAGACCAATTCACAATTTGGTTAATAGAGCTCCGACTCTTTAAAGATAAGTTCCCATACCAGGACACCATAGAGAAAGACAGAATAGATTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_04266133_04266370.mRNA True 1294 mRNA 0.38 1 4266133 4267426

Neighbor

gene id symbol gene type direction distance location
CI01000012_04209791_04237026 NA coding upstream 28973 4209026 ~ 4237160 (+)
CI01000012_04179776_04184166 NA coding upstream 81683 4179776 ~ 4184450 (+)
CI01000012_04052923_04100797 NA coding upstream 165133 4052613 ~ 4101000 (+)
CI01000012_03989870_04006406 NA coding upstream 259538 3989711 ~ 4006595 (+)
CI01000012_03736684_03742335 LMBRD1 coding upstream 523067 3736636 ~ 3743066 (+)
CI01000012_04285964_04292319 NA coding downstream 18168 4285594 ~ 4293775 (+)
CI01000012_04371425_04373907 NA coding downstream 103999 4371425 ~ 4373991 (+)
CI01000012_04386557_04402516 NA coding downstream 118777 4386203 ~ 4402975 (+)
CI01000012_04424569_04425090 NA coding downstream 157143 4424569 ~ 4425756 (+)
CI01000012_04436374_04437448 NA coding downstream 167854 4435280 ~ 4437599 (+)
G71305 NA non-coding upstream 26727 4239125 ~ 4239406 (+)
G71158 NA non-coding upstream 155857 4109941 ~ 4110276 (+)
G71156 NA non-coding upstream 159011 4106835 ~ 4107122 (+)
G71152 NA non-coding upstream 177891 4087869 ~ 4088242 (+)
G71145 NA non-coding upstream 198300 4067613 ~ 4067833 (+)
G71375 NA non-coding downstream 79378 4346804 ~ 4347380 (+)
G71238 NA non-coding downstream 214212 4481638 ~ 4505484 (+)
G71239 NA non-coding downstream 261930 4529356 ~ 4585221 (+)
CI01000012_04551570_04571150 SGPP1 non-coding downstream 277438 4551169 ~ 4571339 (+)
G71442 NA non-coding downstream 374111 4641537 ~ 4641848 (+)
G70029 NA other upstream 1634748 2622478 ~ 2631385 (+)
G68725 NA other upstream 3581277 683523 ~ 684856 (+)
G68660 NA other upstream 3730180 535566 ~ 535953 (+)
CI01000012_00194370_00195347 HCAR1-3 other upstream 4060359 193903 ~ 195676 (+)
CI01000012_04495631_04501066 NA other downstream 231027 4495631 ~ 4501066 (+)
CI01000012_05177587_05180517 SRSF5A other downstream 909469 5176895 ~ 5180970 (+)
G71199 NA other downstream 1145824 5413250 ~ 5416785 (+)
G71218 NA other downstream 1268426 5535852 ~ 5538384 (+)

Expression


Co-expression Network