Gene
RNA
| Item | Value |
|---|---|
| gene id | G69796 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 1853825 ~ 1854102 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| serine/threonine-protein kinase 17B |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU79589 | True | 278 | lncRNA | 0.48 | 1 | 1853825 | 1854102 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_01698932_01719811 | NA | coding | upstream | 133718 | 1697400 ~ 1720107 (+) |
| CI01000012_01692809_01693796 | CISD1 | coding | upstream | 159597 | 1692583 ~ 1694228 (+) |
| CI01000012_01671522_01672166 | NANP | coding | upstream | 181240 | 1671522 ~ 1672585 (+) |
| CI01000012_01544952_01581427 | NA | coding | upstream | 272322 | 1544952 ~ 1581503 (+) |
| CI01000012_01452947_01472013 | DHX57 | coding | upstream | 381678 | 1452947 ~ 1472147 (+) |
| CI01000012_02010306_02155547 | NA | coding | downstream | 155945 | 2010047 ~ 2155886 (+) |
| CI01000012_02160248_02170508 | NA | coding | downstream | 305953 | 2160055 ~ 2171253 (+) |
| CI01000012_02375605_02376849 | MORN4 | coding | downstream | 521503 | 2375605 ~ 2377779 (+) |
| CI01000012_02389469_02394443 | ST3GAL7 | coding | downstream | 535241 | 2389343 ~ 2394676 (+) |
| CI01000012_02507678_02521107 | CNNM1 | coding | downstream | 653576 | 2507678 ~ 2521107 (+) |
| G69760 | NA | non-coding | upstream | 35554 | 1817858 ~ 1818271 (+) |
| G69762 | NA | non-coding | upstream | 38724 | 1814757 ~ 1815101 (+) |
| G69758 | NA | non-coding | upstream | 59540 | 1794016 ~ 1794285 (+) |
| G69115 | NA | non-coding | upstream | 63015 | 1727664 ~ 1790810 (+) |
| G69113 | NA | non-coding | upstream | 126623 | 1726980 ~ 1727202 (+) |
| G69799 | NA | non-coding | downstream | 7544 | 1861646 ~ 1861985 (+) |
| G69801 | NA | non-coding | downstream | 10429 | 1864531 ~ 1864821 (+) |
| G69878 | NA | non-coding | downstream | 361671 | 2215773 ~ 2216010 (+) |
| G70047 | NA | non-coding | downstream | 649756 | 2503858 ~ 2504076 (+) |
| G70050 | NA | non-coding | downstream | 652241 | 2506343 ~ 2506600 (+) |
| G68725 | NA | other | upstream | 1168969 | 683523 ~ 684856 (+) |
| G68660 | NA | other | upstream | 1317872 | 535566 ~ 535953 (+) |
| CI01000012_00194370_00195347 | HCAR1-3 | other | upstream | 1648051 | 193903 ~ 195676 (+) |
| G68282 | NA | other | upstream | 1793293 | 26390 ~ 60532 (+) |
| G70029 | NA | other | downstream | 768376 | 2622478 ~ 2631385 (+) |
| CI01000012_04424569_04425090 | NA | other | downstream | 2566137 | 4424569 ~ 4425756 (+) |
| CI01000012_04495631_04501066 | NA | other | downstream | 2644351 | 4495631 ~ 4501066 (+) |
| CI01000012_05177587_05180517 | SRSF5A | other | downstream | 3322793 | 5176895 ~ 5180970 (+) |
| G71199 | NA | other | downstream | 3559148 | 5413250 ~ 5416785 (+) |
