G187033


Basic Information

Item Value
gene id G187033
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 3761014 ~ 3774562 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU253602
TTTtcattgattgttttatttcgccatttcatgattaaaatacattcaatgaaaatgttGTTTCATCACTAAAACACTCAATGCCTTCACAGAAGGAAACAGACTTCAAAACATCAATATGACATTAGTGGGCAAAGAAACACCTTAAAAAGGTGAGTAAACATTGTTCTTCACTGAAGAAAAGGGTCTAAGATACAGAGCAATGATACATTGCGAATATTAAGTGCTTGTGGTGCGCACAAGAAAATATAGCATGTGATACACATAAAAGCTTATTATAAGCTGAATCTAGAACATGAGTCAAAATTTACTCAATAGAAAGAATACAGTAAACAGGCTTAAAAAACATCAATATGACATTAATTAGCAAAACAAACACCTTTAAAacaaaaagggttaaaaaaacattatcctTCACTGAAGAAATGCAGCTTCAAAGATTTAAAGCAATGATACATTGCTATCATTATCAAGTGATCTTGTTGCATACaagaaattttaaataaaatatgtgatACACATTAAAGCTTATTATAAGCTAAATTTTATAGGGTGTGAGTAAAAATTTACCCAATGGAAGCAATACTCTGTTGCATTTAACAGAGATTATCTAACAATCTGAGATTCTCAGAAATGCAGTAAACAGGATGACACAAATCCTTAAAACAGAAGTGTAATCTGACattaaaacattctttaaaaatcaaGAACATGAAGTTGTACAGTAATCAGACCAGTGTGGTCAGTCTGTTGTATATTCAACAGAGATAAAATCTGTAATTCttctaaaacaattaaaatgatgACACAAATCCTTACAATGGAAATGTGATCAAATAATAgagcattctttaaaaaatcaagaattCATATTTTCACAATCAGAAGATTTTTTTAACATCATTGCTTTCTTAAAACAGAAAGATTTACACTAATTGCcatgatgcaaaaaaataaaatgttaagtttTAACAACTTAAATACTCTCCTGCTCTTCTGCAGAAGGTGAGCACAAGCTTGGAAGAACTTTGAAGTCCATGGAACTTGGTAAACTCAACATGTTTTAAagattaaatgtcttttttcctttcttttcttctttctttctaccAGGGCCTCCAGAGAGCGCTCTCGACCAGGTTCTCCTCTTTGCTGAAGATGATGGTCTGCTGGTCTGAGGAGCTCATCTGAAGCTGAACAGCCTCCAAGCTGTTCTTAGATACAGCAGGATGCTGCAGGTTCTGCAGGACGTGGTTCATCAGTTTTCTCTGAGACTGTGTCTTCACCTCATCTTTGGACAGGAAGTGCAGAAGCTCATGGACACATCTGGAGAAGCCTTGATTGACAGCTGCTGATCTGGAGGAGAatgcaggctgctgctgctgctgctgctgctgtcgtcTGAGGAAGCTGACTGTCATCTCCAGGATATCTGCTTTCTCCAGCTTGGAGTCGGGCTGCTGGTTGAGGAACTCTGCAGTCAGGAGAGTCTCTTTAGC
>TU253606
atttatttttagtagaAGCAATACTCTGTTGCATTTAACAGAGATTATCTAACAATCTGAGATTCTCAGAAATGCAGTAAACAGGATGACACAAATCCTTAAAACAGAAGTGTAATCTGACattaaaacattctttaaaaatcaaGAACATGAAGTTGTACAGTAATCAGACCAGTGTGGTCAGTCTGTTGTATATTCAACAGAGATAAAATCTGTAATTCttctaaaacaattaaaatgatgACACAAATCCTTACAATGGAAATGTGATCAAATAATAgagcattctttaaaaaatcaagaattCATATTTTCACAATCAGAAGATTTTTTTAACATCATTGCTTTCTTAAAACAGAAAGATTTACACTAATTGCcatgatgcaaaaaaataaaatgttaagtttTAACAACTTAAATACTCTCCTGCTCTTCTGCAGAAGGTGAGCACAAGCTTGGAAGAACTTTGAAGTCCATGGAACTTGGTAAACTCAACATGTTTTAAagattaaatgtcttttttcctttcttttcttctttctttctaccAGGGCCTCCAGAGAGCGCTCTCGACCAGGTTCTCCTCTTTGCTGAAGATGATGGTCTGCTGGTCTGAGGAGCTCATCTGAAGCTGAACAGCCTCCAAGCTGTTCTTAGATACAGCAGGATGCTGCAGGTTCTGCAGGACGTGGTTCATCAGTTTTCTCTGAGACTGTGTCTTCACCTCATCTTTGGACAGGAAGTGCAGAAGCTCATGGACACATCTGGAGAAGCCTTGATTGACAGCTGCTGATCTGGAGGAGAatgcaggctgctgctgctgctgctgctgctgtcgtcTGAGGAAGCTGACTGTCATCTCCAGGATATCTGCTTTCTCCAGCTTGGAGTCGGGCTGCTGGTTGAGGAACTCTGCAGTCAGGAGAGTCTCTTTAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253602 True 1499 lncRNA 0.36 2 3765859 3774562
TU253606 False 937 lncRNA 0.39 3 3761014 3774562

Neighbor

gene id symbol gene type direction distance location
LOC111195355 NA coding upstream 2326 3757455 ~ 3758688 (+)
LOC103034153 NA coding upstream 8528 3747979 ~ 3752486 (+)
LOC103034692 NA coding upstream 19996 3739123 ~ 3741018 (+)
abhd6 abhd6,abhd6a,LOC107657977,LOC105904082 coding upstream 36939 3708892 ~ 3724075 (+)
LOC107197672 NA coding upstream 62713 3694335 ~ 3698301 (+)
LOC103027507 NA coding downstream 8378 3782940 ~ 3784341 (+)
LOC103033843 LOC108431592 coding downstream 13667 3788229 ~ 3789355 (+)
LOC103027213 NA coding downstream 29144 3803706 ~ 3805315 (+)
mrto4 mrto4,LOC107701993,LOC107706552,LOC107657981,LOC107712985 coding downstream 110275 3884837 ~ 3891067 (+)
LOC111195456 NA coding downstream 148890 3923452 ~ 3923662 (+)
G187031 NA non-coding upstream 24237 3733953 ~ 3736777 (+)
G187030 NA non-coding upstream 29154 3731592 ~ 3731860 (+)
G187015 NA non-coding upstream 81682 3664240 ~ 3679332 (+)
G186984 dennd6a,LOC107680547,LOC102794572,LOC107657973 non-coding upstream 304123 3449388 ~ 3456891 (+)
G186968 NA non-coding upstream 359589 3354711 ~ 3401425 (+)
G187050 aldh4a1 non-coding downstream 37785 3812347 ~ 3814756 (+)
G187053 aldh4a1,LOC106582961,LOC107712945 non-coding downstream 43811 3818373 ~ 3821891 (+)
G187047 NA non-coding downstream 48697 3823259 ~ 3826100 (+)
G187059 NA non-coding downstream 112087 3886649 ~ 3957459 (+)
G187063 NA non-coding downstream 126409 3900971 ~ 3916783 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 366171 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 758999 2980497 ~ 3002015 (+)
podxl2 NA other upstream 2665677 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 3222798 510575 ~ 538216 (+)
G186231 NA other upstream 3645927 107396 ~ 115087 (+)
p3h1 NA other downstream 2005329 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 3302603 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 3417592 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 4337441 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 4482234 8256796 ~ 8271712 (+)

Expression


Co-expression Network