G187050 (aldh4a1)


Basic Information

Item Value
gene id G187050
gene name aldh4a1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 3812347 ~ 3814756 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU253630
CTTTGGCAAAGACAGCCCCTGTCAGAGCGTATGGAGAGGTGCTGTCAATCAAACTCAGCACTTTCTTGTAATCATTCTCAGGATAGACGTAAACTGTCAGAACTGGCCCAAAGATCTCctcattcattattttatctttCGGATCTTTGGTTTCAATAATGGTGGGCTCAACATAGTATCCCTTTttatcatcacagtttccacCAGCGATCACGGTCAGACTCGGGGAGGTCTTGGCATGATTGAGCCAGCCCTTTATCCTGGAAAAGGACTTCTCGTCTATAACTGCTGAGAAGAACGTTCCAAAATCTTCAACtgg

Function

symbol description
aldh4a1 Predicted to enable 1-pyrroline-5-carboxylate dehydrogenase activity. Predicted to act upstream of or within proline catabolic process to glutamate. Predicted to be located in mitochondrial matrix. Is expressed in several structures, including alar plate midbrain region; optic tectum; optic vesicle; pronephric duct; and yolk syncytial layer. Human ortholog(s) of this gene implicated in hyperprolinemia type 2. Orthologous to human ALDH4A1 (aldehyde dehydrogenase 4 family member A1).

NR:

description
PREDICTED: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253630 True 319 lncRNA 0.45 3 3812347 3814756

Neighbor

gene id symbol gene type direction distance location
LOC103027213 NA coding upstream 7032 3803706 ~ 3805315 (+)
LOC103033843 LOC108431592 coding upstream 22992 3788229 ~ 3789355 (+)
LOC103027507 NA coding upstream 28006 3782940 ~ 3784341 (+)
LOC111195355 NA coding upstream 53659 3757455 ~ 3758688 (+)
LOC103034153 NA coding upstream 59861 3747979 ~ 3752486 (+)
mrto4 mrto4,LOC107701993,LOC107706552,LOC107657981,LOC107712985 coding downstream 70081 3884837 ~ 3891067 (+)
LOC111195456 NA coding downstream 108696 3923452 ~ 3923662 (+)
LOC103026921 LOC108431627 coding downstream 109131 3923887 ~ 4017957 (+)
mrps16 mrps16,LOC107712960 coding downstream 505331 4320087 ~ 4323825 (+)
LOC111195435 NA coding downstream 515843 4330599 ~ 4343289 (+)
G187033 NA non-coding upstream 37785 3761014 ~ 3774562 (+)
G187031 NA non-coding upstream 75570 3733953 ~ 3736777 (+)
G187030 NA non-coding upstream 80487 3731592 ~ 3731860 (+)
G187015 NA non-coding upstream 133015 3664240 ~ 3679332 (+)
G186984 dennd6a,LOC107680547,LOC102794572,LOC107657973 non-coding upstream 355456 3449388 ~ 3456891 (+)
G187053 aldh4a1,LOC106582961,LOC107712945 non-coding downstream 3617 3818373 ~ 3821891 (+)
G187047 NA non-coding downstream 8503 3823259 ~ 3826100 (+)
G187059 NA non-coding downstream 71893 3886649 ~ 3957459 (+)
G187063 NA non-coding downstream 86215 3900971 ~ 3916783 (+)
G187073 NA non-coding downstream 205522 4020278 ~ 4049114 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 417504 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 810332 2980497 ~ 3002015 (+)
podxl2 NA other upstream 2717010 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 3274131 510575 ~ 538216 (+)
G186231 NA other upstream 3697260 107396 ~ 115087 (+)
p3h1 NA other downstream 1965135 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 3262409 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 3377398 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 4297247 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 4442040 8256796 ~ 8271712 (+)

Expression


Co-expression Network