G187073


Basic Information

Item Value
gene id G187073
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 4020278 ~ 4049114 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU253663
ATTTCATAGATACTGAAGCTGTACATGTCTAAATTCAGATTCAAGCACAATGCAGTTTAGCAATGCCTgtcaatgaaaataaaaaaaaaagaaaagaaaagaaaaaggccAAAGTGATCACAAcagttatatgtatatatgtacaaagGTCAAACTATATACAGATATCTGTCTCAACATACAGTATCTCTCCACGCAGGGTGGAAATGTAAGCTTGCTATTGTTTTACATTATACAGAGTTCTTCAAAATGCATATTCAGTGCAAATAATTGCTCCTCGTTGTCGTCACCACCATCATAATTATAACCACCGTCCCCACAACCACCATCCATGTCATTATCAAATCAGGGCAACGAagaatggtaaaaaaataaaattattttctcacttttccttaaaatactgaacataaaaaataatctctCGGGAAATAAAGAATGATGCTTAGATATAAGCActcttcctgtatttatttttatttaatacaggTCTGAttgatatatatagatatatttatgaTATTGATATATTCAAGGAATCAGCGCTGTATCCCTCTTCTTCTGTTACACTGCTGTGGCGTTaggtaataaatattaaaatattaacatgAGAGGtggataaaaaacaaaaaaaaaaacaagccatgCTCTCATTAAAATACCACTCCGGGTATTACCAACGTCAAAAAGCTCTTAAAGCGTTAAGTACTGTCACGGTCTCATTTCATACTGCCCGCTCTCATTTCAGCTTTGGGAGACGATTTAACAGCAAGCTGGTACCATTGGTAGCTAGCTGTGCACCTCGCGGCCTCTTCACATTGATATGTTTTCAAACGTAGTTCCTAACTCACGACCAAACGTAAGTGCTAGCTCACGACGAACATCTTTTCAGTGCTGAACTAATTTCTCACCGAGGACGTCGAACAGTAATGCCCTTCCTTCCTGAGAAAACCTCGAACACAGAAACAGGGCGACGCCATAAAAGcactaataataaacaagacAAACAACAGCAGACTGTCTTCACAGATGAAAAACATCAGGAAATAACCCAAAGCCCGTACACAAACATCtgctctatttttttaatacaattattattatttttttactatgcaTCATTCGCTGCCGTAACTTCGCTTAAGCTTTCCTAGTTCAAATACAGTCGCTACACACAGTATTAAACTGTACCTACCGCATGGAGCAGCAAACAGTGATGTGCACCGTCTTCAACAATGATACGTCAACTAAGCTAACAGACATTTAAAAACGTATGCCTAAATCTTAACCTAACCTAATACTTATACTTCTACTAGCTTCTCAAACAGATCTTACTCTTCACCAAATGGAGTTTCAATCTGACTTCAGTGAACTGAATCAGTTTGGCTTGCTTGATTTCCTTTTAACAATTATTTTCGGGGgaataaacacaaaagaaatAACTGATTAAGTGCAAATCGTTCTGATTGTGAATATGAATATGGTTTTATATGAGAATCGAATGGATTTCTAAAGTTAAATGTTCAcaaagcaggtaaaagtggcccaaatccattttttttatccctTGCGACAAACATAGACCGTGTGTTCTTCACCATTCACACtgctaacattaacattattactCATAGGAAGATACTGGCTAAGTAGGAGGGAAAATCGATGACAGCATTGAAGGAGGATTTTAGTGTAAAGCGAGAACAGCGAGGTAAAAAACCTCAATTATTTGGGGTGATATCTGACCTCGGTTCTAACTAAATTAAAAGTCACACATGCCAAccgcaaaaaataataatatatttttttctttttcaaagctgtactccctctatcactagcaatgacccaacacaaggagggtgagaacaagcacatgcctcttccaaTATGTGAAGTCAATCAGCACCTcttttgctgagtagcatcacaacgcgctctgaggaaaacgcagcggctcacagacgcagccttgtgctaatcaacatcaccttaggagtgatgaggggaaagaaagagcgccatctactgtacccacccagagagagcaaggacaattgtgctctctcagggctccggcagctgatggcaagctgcatgaccaggattcgaaccagcgacctcctgatcatagtggcagcgctttaggcCACTAGACCACCCTAAGCCCCcaaaagatatttttttaacacttttcgGAACACTATTTCCGAAAGAATTAggcaaaggaaaataaaaagcatagtttaaaataaatattgatgcAAAACAAAGAAGCAGGGCGTGGTCAAATACATACCATacatatggaagcccattccctccacctaattaaaaaaaaaaaaaacaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253663 True 2358 lncRNA 0.38 2 4020278 4049114

Neighbor

gene id symbol gene type direction distance location
LOC103026921 LOC108431627 coding upstream 2321 3923887 ~ 4017957 (+)
LOC111195456 NA coding upstream 96616 3923452 ~ 3923662 (+)
mrto4 mrto4,LOC107701993,LOC107706552,LOC107657981,LOC107712985 coding upstream 129211 3884837 ~ 3891067 (+)
LOC103027213 NA coding upstream 214963 3803706 ~ 3805315 (+)
LOC103033843 LOC108431592 coding upstream 230923 3788229 ~ 3789355 (+)
mrps16 mrps16,LOC107712960 coding downstream 270973 4320087 ~ 4323825 (+)
LOC111195435 NA coding downstream 281485 4330599 ~ 4343289 (+)
LOC103029183 NA coding downstream 298611 4347725 ~ 4355832 (+)
tas1r3 tas1r3 coding downstream 431164 4480278 ~ 4491990 (+)
LOC103028563 NA coding downstream 443430 4492544 ~ 4506561 (+)
G187059 NA non-coding upstream 62819 3886649 ~ 3957459 (+)
G187063 NA non-coding upstream 103495 3900971 ~ 3916783 (+)
G187047 NA non-coding upstream 194178 3823259 ~ 3826100 (+)
G187053 aldh4a1,LOC106582961,LOC107712945 non-coding upstream 198387 3818373 ~ 3821891 (+)
G187050 aldh4a1 non-coding upstream 205522 3812347 ~ 3814756 (+)
G187197 NA non-coding downstream 150689 4199803 ~ 4200058 (+)
G187199 NA non-coding downstream 165481 4214595 ~ 4214945 (+)
LOC111195359 NA non-coding downstream 321314 4370428 ~ 4371290 (+)
G187266 NA non-coding downstream 422524 4471638 ~ 4472383 (+)
G187276 NA non-coding downstream 489147 4538261 ~ 4540200 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 625435 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 1018263 2980497 ~ 3002015 (+)
podxl2 NA other upstream 2924941 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 3482062 510575 ~ 538216 (+)
G186231 NA other upstream 3905191 107396 ~ 115087 (+)
p3h1 NA other downstream 1730777 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 3028051 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 3143040 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 4062889 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 4207682 8256796 ~ 8271712 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004340 NA non-coding NC_007122.7 CM002895.2 41699575 ~ 41710057 (-)