LOC103029183


Basic Information

Item Value
gene id LOC103029183
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 4347725 ~ 4355832 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682828.1
GTTCTGTAACTGAACTCAAATCAACAGAAATAACTAGACAATTCTCAGAATCTACTTTATCAGATAAAACCAGTTCTTCAGCATCAACAACTGAACTGAGGTCTACAACAGGAATGACATCAACAAACTTAACAACAGAAACCACAATCACTACTCAATCTGAAGGTCCTACCACTGCAAGCTCAATAGAACATACTACAACTGAAACTCCAGTTTCAGTGTTGTCCTACCCAACGTCTGAGTCTCTTTTATCACCATCAAGTGACTCAACAATATTCTTAACATCGGCTACATCAATAAGCCAAACTACATCATCTGAATCTGAAAGTTTTACCACTGTGGGCTCAACAGAACATACTTCAAGAGAAACTTCAGAACATACAAGTGGGACAAGTCAACAGTCATCAGAATCTACTGTATCAGATGAAACCAGTGTGTCAACATCTGAACTGAGTTCCACAGCAGAAATTACATCAACACCAGAAACCCCACTAAAATCATCTGTGCCAATATCTACAAAGGAAGAACCAACACAAACTCCTCTGGTCCTCTCAACTGAAGAAGCACTTTCAACACCATCTCCTGTCTCAACATCAACAAGTTTAACAACTGACACTTTAAATCCAACCCAATCTGAAGGTTCTACCACATCTGAAAAGTCAATTTCATTACCGCCAACCAACTCAACAACAACCCTAACATCTACCACATCAAGACCAATACTTATTACATCACCTAATACTGAATCTGAAGGTTCTACCACTGTGGGCTCAACAGAAAGTTCTGTAACTGAACTCAAATCAACAGAAATAACTAGACAATCCTCAGAAACTTCAGAACTTACAAGTGGGTCAAGTCTACAATACTCAGAATCTACTTTATCAGATGAAGCCAGTTCTTCAACATTAACAACTGAATTTAGCTCTACAGTGGAGATGACAACCACAGCAAACCCATTACAAACATCTGTGACAATAACTACAACAGAAGAACCTACAGAGAGTCCTCTGGTTCTCTCAACTCAAGAAGCAAATTCAACATCATCTCCTTTCTCAACATCAGTAAGCTTAACAACTGAAACTCCAGTTTCAGTGTCGTCCTCCCCAACGGCTGAGTCCCTTTCATCACCATCAAGTGAGTCAACAATATTCTTAACATCGGCCACATTGATAAGCCCAACTACATCATCTGAATCTGAAAGTCCTATCACGTCTGAAAAGCCAATTTCATTACCATCTAGCAACTCAACAACAACCTTAACATCTACTATATCAAGCCCAATACTTGTTACATCACCTAATACTGAATCTGAAAGTTCTACCACTGTGGGCTCAACAGAACATACTTCTAGAGAAACGTCAGAACATACAAGTGGGACAAGTCAACAATCATCAGAATCTACTGTCTCAGTTGAAGCTGGTTCTTCAACATTAACAACTGAATTTAGCTCCACAGTGGAGATGACAACCACAGCAAACCCATTACAAACATCTGTGACAATACCTACAACAGAAGAACCTACACAGAGTCCTCTAGTTCCCTCAACTGAAGAAATGCTTTCAAAATCTTCTTTCCCAACATCAGCAACCTTAACAACTGATACCTCAATAACTACTCAATCTGAAAGTTCTACCACTGTAGGCTCAACAGAACATACTTCAAGAGAAACGTCAGAACGTACAAGTGGGACAAGTCAACAATCATCAGAATCTACTGTCTCAATTGAAGCTGGTTCTTCAACATTAACAACTGAATTTAGCTCTACAGTGGAGATGACAACCACAGCAAACCCATTACAAACATCTGTGACAATAACTACAACAGAAGAACCTACAGAGAGTCCTCTGGTTCTCTCAACTCAAGAAGCAAATTCAACATCATCTCCTTTCTCAACATCAGTAAGCTTAACAACTGAAACTTTAAATACTACCCAATCTGAAGGTTCTACCACAGCTGAAAAGCCAACTTTATTATCATCAACCAACTCAACCACAACCTTAACATCTATCACAACCCAAAACGCCACAGAAACCACATCATTGACTACAAAATTAACAGAAACTTCAACATTTGCAAGTTCATTTATCCCTACATCATCAACACCCACACAAGCCACTGTCTTCTCCACAACTGAAGCCTCTCATTCCACTCAACCCACTCACTTCATTTCATCTGCTACATCTACTGCTCCAACTCATCCAGACCACACAACAAAGGAGACACCTTCCTCAACAATCCCAACCAACCCAACATCAGTAACAAATTCAACTGGAAAACCAATCCAAACGTCATCTATCACCACAGCAGAAAAAACGTCTTCTACCACAAATGCAACATTATTTTCAGGATCTACTTCTGAAATAGTGACACAGTCTCAaatgaaaagcactgaaaagGTTGCTACATCAACGAGTCAACCTTCCTTCGAATTTACCAActctacttctactactaatcTAGAACCCACAACGAAGGAGACACTTTCATCAACAGTTACAAACCCAACACTGGCTACAAATTCAACAGAAAAGCCAACCCAGACATCAGAAACAATGTCTTCTTTCACAAATGCAACAATATCGTCCAGATCAACCACTGAAATGTTGACACCTTCTGGGAATACAACAACTAAACAGTCTTCTACTCTAACAACTCAACCATCCATTGGATTTACGAATCAGTCTTCAAAATCTCCTGCTGCTTTTACCACTTTACATTCCTCTTCCACTGGTAAAGTGACTCAAATGACACTCTCCTCTTCCACTCAAGTGAAATCAACCATATCTCTTCCAACTACCAGTTCCTATACTTCCATATTAATGAGTGAAACTACGCCAAGTAATTGCATTAATTTCACTTCTGGCGGTTCCTGCAACATTGCAACAGTGATATTGTCTGGAACAAGTCTGGTCAGGAATGCAACTGTTTCTCTAAAGATAGAAAAGAATTACACTTCTGCCTATGAAAATTTGACTTCCCCGGAATCCAAAAGCTTGATTAGCACTTTAATGCCCGTGCTTAATGATTTCTACAAAAAAGCAAACCCACAAAACTTCAGAGCTGTGCACATTATTAGTTTTAGtcAAGGAAGTGTCATCGTCAACAGTAGTGCGGAATACATCTACCCCAACAATCAATCACAAATTGATTTTCTCAACAACAATCTAGAAGAAGAACTGAGGAAAATCTTTAATGATTCTAATACATTGGAGATTCTTGGCAAAGAACTTGAAACCAATGTTTCTTTTGGAGATGTTGTAATGCCAGAGGCTATAATAAACGatattgcAGAATTAAAACCGTACCTGAACTGCACTTTGGACTTTGCCAACTTTTCGCTGGTCATTGAAGACGGTGTGTGGGTATGTGAGGGTCTGTGCAGAAGTGACCCCTCCTACTGCAATTTTCATGGGGAGTGCTTTAATTGGGAGGATGGACCAGAGTGCGAatgctatataaataattttgagGAATACTACGGGCCAAGGTGTGATCTTTACAGCAGAACTTCAGGGTTTTATGCTGTACTCTTTGGAACTTTAGTGGGTGCCCTGTTTCTGCTCTTCATTCTGGTAATGGTAATTTGGCTGCTGCGAAGACGTCATGCGGGGAAATGGTCCATGACCGGCAGGTCTAATCTGAAGAGGTTGTCAATGTTTGATGAGGTCTTCTTTGACTTCAGAGGCTCAGGTTATGGGACATACCAGCTGTATAAAGAAGGAAATGAGACACAACATTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682828.1 True 3740 mRNA 0.40 8 4347725 4355832

Neighbor

gene id symbol gene type direction distance location
LOC111195435 NA coding upstream 4436 4330599 ~ 4343289 (+)
mrps16 mrps16,LOC107712960 coding upstream 23900 4320087 ~ 4323825 (+)
LOC103026921 LOC108431627 coding upstream 329768 3923887 ~ 4017957 (+)
LOC111195456 NA coding upstream 424063 3923452 ~ 3923662 (+)
mrto4 mrto4,LOC107701993,LOC107706552,LOC107657981,LOC107712985 coding upstream 456658 3884837 ~ 3891067 (+)
tas1r3 tas1r3 coding downstream 124446 4480278 ~ 4491990 (+)
LOC103028563 NA coding downstream 136712 4492544 ~ 4506561 (+)
LOC103028044 NA coding downstream 177980 4533812 ~ 4537935 (+)
fam213b fam213b,LOC107702003,LOC107582414,LOC107712975 coding downstream 204470 4560302 ~ 4574554 (+)
miip NA coding downstream 272110 4627942 ~ 4648432 (+)
G187199 NA non-coding upstream 132780 4214595 ~ 4214945 (+)
G187197 NA non-coding upstream 147667 4199803 ~ 4200058 (+)
G187073 NA non-coding upstream 298611 4020278 ~ 4049114 (+)
G187078 kcnab2,LOC108431628,LOC105017255,LOC108255041,LOC106565914,LOC106582955 non-coding upstream 303839 4036514 ~ 4043886 (+)
G187063 NA non-coding upstream 430942 3900971 ~ 3916783 (+)
LOC111195359 NA non-coding downstream 14596 4370428 ~ 4371290 (+)
G187266 NA non-coding downstream 115806 4471638 ~ 4472383 (+)
G187276 NA non-coding downstream 182429 4538261 ~ 4540200 (+)
G187281 NA non-coding downstream 194099 4549931 ~ 4583330 (+)
G187306 NA non-coding downstream 441096 4796928 ~ 4797556 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 952882 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 1345710 2980497 ~ 3002015 (+)
podxl2 NA other upstream 3252388 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 3809509 510575 ~ 538216 (+)
G186231 NA other upstream 4232638 107396 ~ 115087 (+)
p3h1 NA other downstream 1424059 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 2721333 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 2836322 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 3756171 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 3900964 8256796 ~ 8271712 (+)

Expression


Co-expression Network