fam213b (fam213b,LOC107702003,LOC107582414,LOC107712975)


Basic Information

Item Value
gene id fam213b
gene name fam213b,LOC107702003,LOC107582414,LOC107712975
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 4560302 ~ 4574554 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251442.3
gctgtccGTTGTTATTCAACGCGGCTGTTACACACGTGGGCgggtccagcagagagcagggAGAGAACAGCAGAGCTGCAGTAAACACACGGAAAACACTGGAaattacaataaacagaaatgtcGACTGTAAATTTATCCAAATTAGGCTCTAATCTGCTGAAAAGCGCCGCTTCTGGAGAGAACGTGGAGCTGGGCTCTCTGTGGCGGGATCAGACAGTGGTGCTCTTTTTCCTCCGGCGGTTTGGTTGCCAGATCTGCCGCTGGATGGCTGCGGAGGTCAGTAAGCTGGAGACGGACCTGAAGGCTAATGGAGTAGCTCTCATAGGTGTAGGACCTGAAGAGATGGGACTGAAAGAGTTTAAGGAAGGAGGTTTTCTGAAGGGAGatatttacATTGATGAAAAGAAACAATGCTACAAGGACCTCGGATTCAAGAGATATAATGCTATAAATGTGGTTCCTGCTGCATTGGGGAAAAAAGTACGAGAAATCTCCTCAAAGGCAAGTGCTGAAGGAATTCAGGGCAACTTCAGTGGGGATCTTTTACAAAGTGGGGGCATGCTGATTGTTGCTAAAGGTGGTGAGAAGGTCCTGCTGCACTTCATCCAAGACACACCAGGAGACCATGTACCGCTGGAGGACATAACCAAAGCCCTGGGCATCAGCGCCAGCGTTCAGGCTGGCGTGAGACCACAGTGCAACGATGACGTCTGTACAAGATGAAGAATCGCCGCTGTTTTCAGGAGCCTACACTgcaacttttgtttttattttgacaccAATCACTGTGTTACAGTTTTACAtgaagtttattaataaatgttttaatttattgtgtatCATTTCACTTTCAGAGGAAAGTAATCACACTGATATATTACCGATCAGTAACTCACAACAAAATATCATATATCAATCCTGATTTACATGATTTTGTCACATTTTCATGACAATTTGTTTATGATCTAAATTTAAATCACTGTACTTCGCGGCTTTGACGTCTTTCAGGCTGAATGGGATTTTTAGCTGCTCATTTAGACTCTGCATGTGCCAGCTAAGTGATTTTACACTTTACTCTGAGGTGTTTTTCCACCCTGTCTGCTGGAGAACTGATACTTTTGGTTTCTTGCTGATTGGTTGTCTTTAATGTGGAGCATCCTTAGGTTTGAGAAAGGTACTAAataaagtggcaaaaaaaa

Function

symbol description
fam213b prostamide/prostaglandin F2alpha synthase

NR:

description
PREDICTED: prostamide/prostaglandin F synthase

GO:

id name namespace
GO:0001516 prostaglandin biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005829 cytosol cellular_component
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K15717 PRXL2B, FAM213B; prostamide/prostaglandin F2alpha synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251442.3 True 1202 mRNA 0.44 7 4560302 4574554

Neighbor

gene id symbol gene type direction distance location
LOC103028044 NA coding upstream 22367 4533812 ~ 4537935 (+)
LOC103028563 NA coding upstream 53741 4492544 ~ 4506561 (+)
tas1r3 tas1r3 coding upstream 68312 4480278 ~ 4491990 (+)
LOC103029183 NA coding upstream 204470 4347725 ~ 4355832 (+)
LOC111195435 NA coding upstream 217013 4330599 ~ 4343289 (+)
miip NA coding downstream 53388 4627942 ~ 4648432 (+)
LOC111195358 NA coding downstream 76977 4651531 ~ 4666036 (+)
tnfrsf1b NA coding downstream 123974 4698528 ~ 4716976 (+)
LOC103025797 trim62,LOC107756651,LOC107712973,LOC107582411 coding downstream 152735 4727289 ~ 4794776 (+)
trnae-cuc_2 NA coding downstream 215422 4789976 ~ 4790047 (+)
G187276 NA non-coding upstream 20102 4538261 ~ 4540200 (+)
G187266 NA non-coding upstream 87919 4471638 ~ 4472383 (+)
LOC111195359 NA non-coding upstream 189012 4370428 ~ 4371290 (+)
G187199 NA non-coding upstream 345357 4214595 ~ 4214945 (+)
G187197 NA non-coding upstream 360244 4199803 ~ 4200058 (+)
G187306 NA non-coding downstream 222374 4796928 ~ 4797556 (+)
G187305 NA non-coding downstream 223062 4797616 ~ 4800508 (+)
G187307 NA non-coding downstream 226552 4801106 ~ 4801906 (+)
G187400 NA non-coding downstream 297811 4872365 ~ 4872778 (+)
G187399 NA non-coding downstream 366471 4941025 ~ 4949650 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 1165459 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 1558287 2980497 ~ 3002015 (+)
podxl2 NA other upstream 3464965 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 4022086 510575 ~ 538216 (+)
G186231 NA other upstream 4445215 107396 ~ 115087 (+)
p3h1 NA other downstream 1205337 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 2502611 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 2617600 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 3537449 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 3682242 8256796 ~ 8271712 (+)

Expression


Co-expression Network