LOC103028044


Basic Information

Item Value
gene id LOC103028044
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 4533812 ~ 4537935 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251444.3
GGGTTGGCGCGTCACCGAGCTGGTTTTCAGTTCTCAGCTTTGAGGCGCGTTTGGTTCACTCTCTCCGTTTTCCTCCAGCTGCACGGGGCTCCTCTCCTCCACTAACTTACACTTTAATTTCACATCACATCTCAGCAGCCATGGCCGACACCGCTGTAGACACGACCACTGCCCCTGAGGTTACCGCCAAGgaCCTTAAGGAGAAGAAAGAAGCTGTGGAGGAGGTCGAGGAGGCCCCAAAAGAGAACGGCAATGGGGACGCACCTGCCAATGGCAATGGAACAACGacCAATGGTGACTCTCACAAAGAAGCCAGTGAAGAGGAGGAAAAGGAAGCTGAGGAGGAAAAGGCTCCAGAGGGGGAGGGTAAGGAAGAGGAGAAAGCTGCTGAAGAGGAAGCAGATGGGCAGGCAGTGAAACGTCCAGcggaggaggagGAGTCAGttgaaacaaagaaacagaagacagaggAGAATGGTGAATCCACAGAAGCTGAAGTGAAAGCCTAAAGCCTTTGCTATCCACCTTGGTAGCTCTGTCTGTGTGGTCAAACTGACCTGGTAGAGTCTGTGCTTCTGCGTTTAATTTACAGATGTCCTGTTATTCCCCCGGACCTTCCCTTTACAAACATATTGCACTGAAACCTATATCATCATGACCCCTTCCTCTTTTGTAAGATGTTATTTATTGGTGTAGGAGCATTTTAGTACCCTTTTGTAAGATGGAAACTTATACATATGAATTAATCCATAAGTTTGTAAGCACATACTCTACTGGGGTTTTTGaccaacagaaacacacacaaagccgCTGTACCCTTTCTCTTAATGTTCTGACATTTACATGGGTGATAAAACTCTGATTCACTTAAGACCAAAGATAAAGTTTTAAGCAGGGGCTAATAGACAATGTTTAATCCCGACTGTTTGTGCTGCTAGTAGTTAATCCCTTGCTTGGCTGCAACAGATGGCATACGTAAATGAAAGGGTCTCGTTACTGCGCCTAGTTGAAAAGAAAAGATGGCTTGTCCCTTTATGCGACTAGCTTATGTCATGTTAATTAACCCCTCTTAAACCTTTAAGGTTTTTGGTCTTTTGTTCCATATGCATTCCAGAAGGATTGTACCTTTTTCATATCCTTATGTacagtttcagtttttgtttggtCGGTTTGTTTTGTATGGGGGAGTGCAGGATCGAAACAGCCTATATCAGAACAACATGCTGGCACTGGTGTTCTCAGTCCTCTAagcgattttcttttttatgattgTGTTTTGGTTGCTTTTGACCACTGCTTTGTATATTCTGGTTCAGgagtataaataaaatcaatcttGTCTTTTTAAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:1901265 nucleoside phosphate binding molecular_function
GO:0036094 small molecule binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko05168 Herpes simplex virus 1 infection
ko05322 Systemic lupus erythematosus

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251444.3 True 1349 mRNA 0.44 5 4533812 4537935

Neighbor

gene id symbol gene type direction distance location
LOC103028563 NA coding upstream 27251 4492544 ~ 4506561 (+)
tas1r3 tas1r3 coding upstream 41822 4480278 ~ 4491990 (+)
LOC103029183 NA coding upstream 177980 4347725 ~ 4355832 (+)
LOC111195435 NA coding upstream 190523 4330599 ~ 4343289 (+)
mrps16 mrps16,LOC107712960 coding upstream 209987 4320087 ~ 4323825 (+)
fam213b fam213b,LOC107702003,LOC107582414,LOC107712975 coding downstream 22367 4560302 ~ 4574554 (+)
miip NA coding downstream 90007 4627942 ~ 4648432 (+)
LOC111195358 NA coding downstream 113596 4651531 ~ 4666036 (+)
tnfrsf1b NA coding downstream 160593 4698528 ~ 4716976 (+)
LOC103025797 trim62,LOC107756651,LOC107712973,LOC107582411 coding downstream 189354 4727289 ~ 4794776 (+)
G187266 NA non-coding upstream 61429 4471638 ~ 4472383 (+)
LOC111195359 NA non-coding upstream 162522 4370428 ~ 4371290 (+)
G187199 NA non-coding upstream 318867 4214595 ~ 4214945 (+)
G187197 NA non-coding upstream 333754 4199803 ~ 4200058 (+)
G187078 kcnab2,LOC108431628,LOC105017255,LOC108255041,LOC106565914,LOC106582955 non-coding upstream 489926 4036514 ~ 4043886 (+)
G187276 NA non-coding downstream 326 4538261 ~ 4540200 (+)
G187281 NA non-coding downstream 11996 4549931 ~ 4583330 (+)
G187306 NA non-coding downstream 258993 4796928 ~ 4797556 (+)
G187305 NA non-coding downstream 259681 4797616 ~ 4800508 (+)
G187307 NA non-coding downstream 263171 4801106 ~ 4801906 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 1138969 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 1531797 2980497 ~ 3002015 (+)
podxl2 NA other upstream 3438475 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 3995596 510575 ~ 538216 (+)
G186231 NA other upstream 4418725 107396 ~ 115087 (+)
p3h1 NA other downstream 1241956 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 2539230 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 2654219 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 3574068 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 3718861 8256796 ~ 8271712 (+)

Expression


Co-expression Network