G187305


Basic Information

Item Value
gene id G187305
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 4797616 ~ 4800508 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU253981
gctgaagctgaagcattataggatgtaaacagtgttttaaataagcttcttctgcactttttaagttattaatgcctcgttttaaacgTCAGGGCTCTCCTGATTCTAGCAAGgagatgtggagctactttaaactGGATAACGGtagaaaaagcgatttatctgggtaaattatgccctgtgtcacccagtctgaagggtgtttttgGACAAACTGACGAGCACAAACAAAGAAGCAGGATAGATAGCGAACGAATTGCAAGATAAGTTCAGTGGAAATGCATGCATGCAATTCCAGATTTTGCTGACTatcattttaacaaaaatacatttcctcTATTTCCCTGGTGatttttattgattgttttGCTACACATTATCAAATTTAACAgaattaaatgtacagttgggttagtttttttattattatttatttgtgcactgatgatatcctcaatatgagtaacaaaaatatagtGTTGATAATGTTACTGCGATAAGAAAATTGATCACAATacgataaaatattgttatattgcccagctctgcTTGCTTCCCTTTACCCTTCTTTCTTTGTGTCCTGATTTTATGTTAGTTTAATATTCTGCACATAGAAAAATAATGGTCATGAGACAGTCAAAGGATGTATGTTATATGGTGGTTAAAGGACTGTCAGACGTCGTGTATTtttgctgctgatggagaagagaGGTTTGTGACATTTGTTGCACATTTGTTGATGTACATATTGCTGGTGATACCACTACATCTAGTGTTCCTTCTGTTCTTCATGTTCCTCatgtttcttgtgtttttttggccTTCAGCATATATTGTTTGTCatgtattgtttttatgtacTGGTATCTAACCTCGTTTTACTCCATAGTACCTTTCTTCCCACACTTCTTActccttaaaggagaactctggtgtaaaatggacttttgttgtagtaaaacataaaaaagtacttttgaTGAATAGCCCAACTCTGTTCTCTCACAGCGTTctgacaccaggaggcaggctatgtggagtctatgtatatatttgtctgtcattatcagtacagtaatggcggcgctcagagctaAGAAAATAgggttatgggatgtaaacagtgtttttaaataatctttttctgcactttttaagttattaacgcctcattttaaatgttagggctctccagattctagcaaagaggtgtggagctactttgagctggataactgtggaaaaaaactaattttcggggcaaattatgccccgtgtcactcagtctgaagggtgtttggacaaactgttaaaatttctggatctcagaacccTGTGGGAAAACgtaggtgtgctattcatcaaaggtaagaactttttaacatgttttactacactaaaaaaaaaaggacattttacaccagagttctcctttaaggccaatttatacttctacaGCAAACCTACGCTGTAGCCTACGTGTATTCACCGAGAGCGCACTAAGCAGCAGAGCgcgtttatacttctgtgtgcgCGTATCAGTGGCTCTGCGTtgctttacagtttaaaaacgaGAAGGGGGAATGTGTGGGTGGGAACACGAGGCCCGGCAGACCAGTCACAGCAGCGGCTGTCCTCGTTGTGTGACGTGTAGTTACATTTCCAGCGAGGTGCGCATCAAGCTATGCTGTAGGTTTgaagcagaagtataaattgggttCTCACTGCCTTCCCGAGGATGTCTCATTAGAACAGTCAGTGTGTTAAAGTGAGCATCAGGCCATCTGTCTTTCACTATCACTTTAACACTGAATCTGATTAAGCAGAAAGTGTGCAAGATGTTTGATTaatgtttttggtttttttttttttttatgtaaccaAAGAGTGCAAAACCATTCCATTCCGTTTTattataaaagaaagaaatagttCTGATaataacagcaacaacaacaaaagaggGCCAAATATTTTTATGAACTGACCTTAAATGACCTTAGCTGACCTTAAAACTGACCTTTCCATGTAAATAGTTCAAATAGCTCAACTTCAGGTGATGttaaactgttctttttttgtttgctctCTTGTTTGTTGTGATGTTCTTGGTAAGAAATGGTGAAAATGCCTAAAGATTCTGGATTCTGCCACTAAAGTCTTACACAGTTGCTCTGCACATAAACTGCTGAAGAACTCTATACCTACGTCTCTGAACGCACTTTCCCACTTTTGTTATTTGCCCATGAAGGGATGTTCCCACTACCGCAGTGTAAACATTCGGTACACTGATATTCTCTAAGGTCCAATTATAAAGCGCAGCTCCTCTGTTCTAATACTTCAGGGAGCTTTAGCAGtttctttatatttgatattCTGCCCACGTCAGCAATAACCGTTCTGCTATAATCATTCTCTCTGCTTTTGCATAGCAGAATGGAGCTTTATCTAACCAGCTAGAGAATGTGTGAATTTCCTACTTTTAAATCTCCTGCAGCAGATTATTGGTTCAGTATTAACCATATTGAACCCCATTCCAGATCATTGCACATCTCTCTACTGCTGGGATCAGCAGCTCTGTTCCTGGATATCTGCTTtctgatttgtatctgttttaaatttgtATTGGGTGCAGGTGTTTAATagtgacaaacaaacaaaatagaatatcaatgaaaagttactttatttcagtaattcagttcaaaatctattataaatgtttatttttttatt

Function

GO:

id name namespace
GO:0140110 transcription regulator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253981 True 2736 lncRNA 0.37 2 4797616 4800508

Neighbor

gene id symbol gene type direction distance location
LOC103025797 trim62,LOC107756651,LOC107712973,LOC107582411 coding upstream 2840 4727289 ~ 4794776 (+)
trnae-cuc_2 NA coding upstream 7569 4789976 ~ 4790047 (+)
tnfrsf1b NA coding upstream 80640 4698528 ~ 4716976 (+)
LOC111195358 NA coding upstream 131580 4651531 ~ 4666036 (+)
miip NA coding upstream 149184 4627942 ~ 4648432 (+)
LOC103024549 LOC103024549,LOC108441419,LOC107756648,LOC107654396,LOC107592863,LOC107582410,LOC107654432 coding downstream 25586 4826094 ~ 4841765 (+)
LOC103025087 NA coding downstream 59361 4859869 ~ 4869789 (+)
LOC103023712 NA coding downstream 72521 4873029 ~ 4884366 (+)
tnfrsf9 NA coding downstream 87011 4887519 ~ 4895041 (+)
LOC103023081 LOC108441425 coding downstream 136486 4936994 ~ 4940065 (+)
G187306 NA non-coding upstream 60 4796928 ~ 4797556 (+)
G187281 NA non-coding upstream 214286 4549931 ~ 4583330 (+)
G187276 NA non-coding upstream 257416 4538261 ~ 4540200 (+)
G187266 NA non-coding upstream 325233 4471638 ~ 4472383 (+)
LOC111195359 NA non-coding upstream 426326 4370428 ~ 4371290 (+)
G187307 NA non-coding downstream 598 4801106 ~ 4801906 (+)
G187400 NA non-coding downstream 71857 4872365 ~ 4872778 (+)
G187399 NA non-coding downstream 140517 4941025 ~ 4949650 (+)
G187409 NA non-coding downstream 177876 4978384 ~ 4989227 (+)
LOC111195360 NA non-coding downstream 191033 4991541 ~ 5004012 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 1402773 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 1795601 2980497 ~ 3002015 (+)
podxl2 NA other upstream 3702279 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 4259400 510575 ~ 538216 (+)
G186231 NA other upstream 4682529 107396 ~ 115087 (+)
p3h1 NA other downstream 979383 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 2276657 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 2391646 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 3311495 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 3456288 8256796 ~ 8271712 (+)

Expression


Co-expression Network