tnfrsf9


Basic Information

Item Value
gene id tnfrsf9
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 4887519 ~ 4895041 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251426.3
CACAGcttatagagtgtgtgtagagtttttgtaaagtgtgtgtagagCGTGTGAGCTTTCTGCCAGTCAGACACAGcttatagagtgtgtgtagagttttgTAGGGTGTGTATAGAGCGTGTGAGCTTTCTGTCAGTCAGACACAgggtatagagtgtgtgtagagattGTGTGATCCTCTTGTACAGCTGAACTGAGTTGAGCATCTTCAGGAATGTGGTGTATACTGGTTGTGATGCTGGTGCTGCGTCTGGCACTGGGACAGCAGGTGGAATCTGGATGTGAGGACTGGTATAAAGAGCCCCGATCCTCAAACGATGTCTGCTGCAACAGATGCAAGCCAGGAAACCGGCTGGTGAATCACTGTGGTGCCGACCCCAAGGCtttgtgtgaggtgtgtgagaACGGAACATACATCACCGACGGCAACCAGAAGATGTGCCAGAGATGCAGAGTCTGCACAGCTCCAATGAGAGTGAAGCAGGCATGCACTTTTAGCAGTGATACGGTGTGTGAGTGTGACCAGGGACTCCGCTGTGGAGATGATCAGTGCTCCTACTGCATTCAAGAGTGTGGAAAAGGGGAGGAGCCTTCAGATAAGAGAGGTTGTCGGCCTTGCCCTGAAGGAACATTCAACAGTGAGATCCATCACGTCTGTGTGAAGTGGAGCAGCAGCTGCTCATCACCAGACCAGAAGATCATAGCTCAGGGTACAGCTGTCAGTGACATCGTCTGTGGCCCAAAGGATGACCCTAAACCCATCACTCCAGCGGCTAAACCCACCAAGATCCAGCCAGACAGTATCGATATCTctCCTTGGACTACAATGGGCATTGCCATCATTTGTGCCTTCCTCATCCTCTTTATAGCCATGATACTGATCACAGGTATTGTGTGTAAAAATGGAGAGAAGCTGAAAACTGCTCCTGAGCATGAAAAAGCTCCACTGGGTTGGATGCAGACTCCCGAGTCCGAGCAGTGCAGTTACTGCTCTCCACAGGAGGAGGAGGGCAGCAGCAGTGATTTGTCGCTGGTGTCCGTTGATAAGCCCTTTGAGCTGGTTGTTTGACGTCTGACTCAAAACGTCTGTTTTGAGTGCTGTTTTATACATAtaattacatacagctctggaaaaaactaagagatcacttcagtttctgaatcagtttctctgatgttactatttata

Function

GO: NA

KEGG:

id description
K05146 TNFRSF9, CD137; tumor necrosis factor receptor superfamily member 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251426.3 True 1189 mRNA 0.48 7 4887519 4895041

Neighbor

gene id symbol gene type direction distance location
LOC103023712 NA coding upstream 3153 4873029 ~ 4884366 (+)
LOC103025087 NA coding upstream 17730 4859869 ~ 4869789 (+)
LOC103024549 LOC103024549,LOC108441419,LOC107756648,LOC107654396,LOC107592863,LOC107582410,LOC107654432 coding upstream 45754 4826094 ~ 4841765 (+)
LOC103025797 trim62,LOC107756651,LOC107712973,LOC107582411 coding upstream 92743 4727289 ~ 4794776 (+)
trnae-cuc_2 NA coding upstream 97472 4789976 ~ 4790047 (+)
LOC103023081 LOC108441425 coding downstream 41953 4936994 ~ 4940065 (+)
LOC103021734 dnajc11,LOC107654442,LOC107751176,LOC103038967 coding downstream 577441 5472482 ~ 5486413 (+)
fbxo2 NA coding downstream 613267 5508308 ~ 5517565 (+)
wnt4 wnt4,wnt4a,LOC107565731,LOC107654388 coding downstream 830302 5725343 ~ 5731344 (+)
ap5b1 ap5b1 coding downstream 870408 5765449 ~ 5771297 (+)
G187400 NA non-coding upstream 14741 4872365 ~ 4872778 (+)
G187307 NA non-coding upstream 85613 4801106 ~ 4801906 (+)
G187305 NA non-coding upstream 87011 4797616 ~ 4800508 (+)
G187306 NA non-coding upstream 89963 4796928 ~ 4797556 (+)
G187281 NA non-coding upstream 304189 4549931 ~ 4583330 (+)
G187399 NA non-coding downstream 45984 4941025 ~ 4949650 (+)
G187409 NA non-coding downstream 83343 4978384 ~ 4989227 (+)
LOC111195360 NA non-coding downstream 96500 4991541 ~ 5004012 (+)
G187473 NA non-coding downstream 592047 5487088 ~ 5487811 (+)
G187472 NA non-coding downstream 593919 5488960 ~ 5489830 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 1492676 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 1885504 2980497 ~ 3002015 (+)
podxl2 NA other upstream 3792182 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 4349303 510575 ~ 538216 (+)
G186231 NA other upstream 4772432 107396 ~ 115087 (+)
p3h1 NA other downstream 884850 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 2182124 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 2297113 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 3216962 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 3361755 8256796 ~ 8271712 (+)

Expression


Co-expression Network