LOC111195360


Basic Information

Item Value
gene id LOC111195360
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 4991541 ~ 5004012 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651588.1
ACTGAGTCTCCTCTGGAGCtgtctcttcatttctctcctGTTTTACAGAGTCTCAGACTACCTTCATTGAGTCACAGCACAGAAGCAAAGGGGATTATTCTTCTACTGGAAACACAGTTTGTCCGGTTGAGTGTTTTGTTTcaacagtaaaagtgcagttcATggctaATTGGTTGGTAAAGCTCCACTGTGCTATTCCATACCAGTGTGGACCCCAGGGTTTCCCGCAGTAGTGTAAggtcaaaaacaaaacaacaaaacagtaAGTCACAAGCACCACCTCCCAAAGTAAAGTAGTGTTGAGTCAAGTCCTTTCTTTTCTGGATTTAAATAGTATTTAGCAATGATTAAAGAAAAgcaaatattacattatttgtcTAGCCAATCACTGGATCCATACATCAATAAGCTCTCCTGAACGCTGCTGTGGCCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651588.1 True 435 lncRNA 0.41 3 4991541 5004012

Neighbor

gene id symbol gene type direction distance location
LOC103023081 LOC108441425 coding upstream 51476 4936994 ~ 4940065 (+)
tnfrsf9 NA coding upstream 96500 4887519 ~ 4895041 (+)
LOC103023712 NA coding upstream 107175 4873029 ~ 4884366 (+)
LOC103025087 NA coding upstream 121752 4859869 ~ 4869789 (+)
LOC103024549 LOC103024549,LOC108441419,LOC107756648,LOC107654396,LOC107592863,LOC107582410,LOC107654432 coding upstream 149776 4826094 ~ 4841765 (+)
LOC103021734 dnajc11,LOC107654442,LOC107751176,LOC103038967 coding downstream 468470 5472482 ~ 5486413 (+)
fbxo2 NA coding downstream 504296 5508308 ~ 5517565 (+)
wnt4 wnt4,wnt4a,LOC107565731,LOC107654388 coding downstream 721331 5725343 ~ 5731344 (+)
ap5b1 ap5b1 coding downstream 761437 5765449 ~ 5771297 (+)
cldn19 cldn19,LOC107654447,LOC107582397,LOC107751184,LOC107565733 coding downstream 813972 5817984 ~ 5835626 (+)
G187409 NA non-coding upstream 2314 4978384 ~ 4989227 (+)
G187399 NA non-coding upstream 41891 4941025 ~ 4949650 (+)
G187400 NA non-coding upstream 118763 4872365 ~ 4872778 (+)
G187307 NA non-coding upstream 189635 4801106 ~ 4801906 (+)
G187305 NA non-coding upstream 191033 4797616 ~ 4800508 (+)
G187473 NA non-coding downstream 483076 5487088 ~ 5487811 (+)
G187472 NA non-coding downstream 484948 5488960 ~ 5489830 (+)
G187471 NA non-coding downstream 486073 5490085 ~ 5491257 (+)
G187475 NA non-coding downstream 490458 5494470 ~ 5495414 (+)
G187477 NA non-coding downstream 495092 5499104 ~ 5501876 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 1596698 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 1989526 2980497 ~ 3002015 (+)
podxl2 NA other upstream 3896204 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 4453325 510575 ~ 538216 (+)
G186231 NA other upstream 4876454 107396 ~ 115087 (+)
p3h1 NA other downstream 775879 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 2073153 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 2188142 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 3107991 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 3252784 8256796 ~ 8271712 (+)

Expression


Co-expression Network