G187047


Basic Information

Item Value
gene id G187047
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 3823259 ~ 3826100 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU253625
CGAGTgagaaatatattgtttttattgttttttttaaccccaGCACCAATCACATTCATCATTTTGAAACATTTGTACATCCGTCCCGCTCGCCAAATGCAAAAGTACTTATCTGGATCATTAACAAACATTTGCCAGAAAAGCCCATTTccaaatatgtatgtatatatgtgcattTTAAGACAACTCAACAGaaagaaaaatgcagaaaaggTCAATTCTCTGAATGAGCATTTAGAACATCACTTACATTGGAAGACATTCCACCACTGAAGCAGCTCATGATAGGCTGTGAGATAACGTATTAATGCATCACCCATAACAACAGAACAATaatgaactgaaaataaaatgtaataatatgaTGAACAAAATCAATAATTCCCACTAGCatagataaaaaaacatgaacaatgaAGCCCCATTTACATAAAAGTGTTTAAGTTATTACTTATTAACAGGGTTTGCCAGATGAGGCACAGTCAGAGCTCTATCTGTAAAGCTTAAAGGGGCACTCCGGCCTAAAACTAGccttttaaaatcattaagGTCCTCAATATATAGCGCAGCAGTGTGTCCCTCTGATCTCGCTGTACTACAATACCCAGCATGCATTGCACAGTCATACAAGTTAAACATTCATGGACAATGTGAGTGCTAGCATAGCCACAGGCTAAAAAATACAACAGTGAAACCTGAATACCTCCCACTCTTATGTATCACACTAAAAGCATTTATAGATTTTTGATagatggctgtgtcccaattgcatACTATTAATCTACTAATACTATAGAGTGTACAGCATATACTAAAGGTGGGCAAAATACAATgacatgacaatattttatcatgTCATGTTCAATTTTCTTATCATTTAAACAACCaacaatatacttttttaagcATATCAAACAAACTCTGTTTGTCCTGGGTGAAGAACAGGACAatttgaataaaacaaataattgtatttaatatGAATTGTATATTGAATTGTAGTTTGCAAGGATGTGTATCAAGATAAATTAATTTactgtgatataatatttttatcatatctCCCAGGCCTaggatataataatattaataatacaggtttttctacattgtaaatgaatactgacgTATTCCAAACtgtaggaacacataaggaattaatgtagtaatatacaaatgttaaacaaacaaaaatattcttGTCTGTGGAGCTGTTAACTGGAGCTGGTAGCTCTGATGAACATATCCTGTACAATAGAGGACacttttgctcttcctttcctggtcctgatgagtgccagtttcaacattataatgtttttgaaggGATACTTTCAATGTTCTTGAAATTGACTTTCAgattaatttaactttatttttctttaaggtAATTTctgtctttacttagttgagtagatcttgcttctcataatctggattagaacattacttaaatattcactattcactgtatacctgtaactctacctcttcactactttactataactgatgctctcaaacacattaagagacaagaaattcaagtaattaacgcttgatgagttcagcacagctgttaactgaaagcctgaattccaggtgactctacctaatATGCAATTGGGATGTACGCCATAAAGAAAGGGGCCTTGAAGAGTCTCAGCAGGACTGTAGGAGGCAAAGAGGATTCTGCGATGgtttacatattatatatatatatatatatatatatatatatatgtatatgaaaaATTTGGCCGGAGTGCCCCTTTAATAAAGCACTTAATGAACTTTTAAACAAAAGACATGTTGAGACAATGATACACTGATAATCACTGAATTAATGACAAAATTAACATCATAAGCTGGCTGTCCACTCAAATGAAACATTGTGGGACAGTCTCCCAAGCACTACACAGCATTCTacatggagattttccattctaTGACAAGGCGTAAACCCTATCTGGAAAAATGACCCCAAAATTACACTTAAAAATGTACAGCTGgattacataaagaaaaaaaagctctttGTGGACGATGTCTCCACAGGACCTTACATTCAGTCTCTGAGGTATCGTAATGAGCTCTTGTTCGCAGACGGTAACATTTTTGATGttatggagagaaaaaaaataaagatgcagcACAAACTATGTTGATCTTTCCTGACTTTTCATCTTACTTAAACTATCAGTCCCACTTACAGTATATCCATATAGATTCATCCAGTAAGAAGCTCCTCCCCCACTAAGAAAAATGCCTACACACCTCCACAATCCAGACAGCGCTAATATTTACTGTACTTAATATTTCGTACATGCTTTTCAAGCACAGACCTTATGGCACTAACACAGTCAGACTGGACAGGCTTTGCTCATGAACCCGTGCTTACACCTCTTTGTGCTGATGAGTCAAAGTTGCAGAGAGATCATTAATGATCAGAAAGCCTCTCTAAGAAATTTCAACTCCATTAAGTTTAGCCTGTTTCTGATTAAACACAGACAAAGCAGCATATAGTTATGGAAACCTATCCCCATCAAGTAGAGGAGAAACATCTCATACCTGTGTGAAAATATTGACTTAATCTAAAAGTAAACTTCTTCTCAAAATTGCGACTTCCAAGCATGACAAACTGGAAAAActctattatatagatgtattacatgcgaagtgatctattttaagcgtttatttcttttattgttgataattatggcttacagataataaaaacccaaaaatcagtgtctcaaaaaagtagaatattatataagaccaactg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253625 True 2791 lncRNA 0.34 2 3823259 3826100

Neighbor

gene id symbol gene type direction distance location
LOC103027213 NA coding upstream 17944 3803706 ~ 3805315 (+)
LOC103033843 LOC108431592 coding upstream 33904 3788229 ~ 3789355 (+)
LOC103027507 NA coding upstream 38918 3782940 ~ 3784341 (+)
LOC111195355 NA coding upstream 64571 3757455 ~ 3758688 (+)
LOC103034153 NA coding upstream 70773 3747979 ~ 3752486 (+)
mrto4 mrto4,LOC107701993,LOC107706552,LOC107657981,LOC107712985 coding downstream 58737 3884837 ~ 3891067 (+)
LOC111195456 NA coding downstream 97352 3923452 ~ 3923662 (+)
LOC103026921 LOC108431627 coding downstream 97787 3923887 ~ 4017957 (+)
mrps16 mrps16,LOC107712960 coding downstream 493987 4320087 ~ 4323825 (+)
LOC111195435 NA coding downstream 504499 4330599 ~ 4343289 (+)
G187053 aldh4a1,LOC106582961,LOC107712945 non-coding upstream 1368 3818373 ~ 3821891 (+)
G187050 aldh4a1 non-coding upstream 8503 3812347 ~ 3814756 (+)
G187033 NA non-coding upstream 48697 3761014 ~ 3774562 (+)
G187031 NA non-coding upstream 86482 3733953 ~ 3736777 (+)
G187030 NA non-coding upstream 91399 3731592 ~ 3731860 (+)
G187059 NA non-coding downstream 60549 3886649 ~ 3957459 (+)
G187063 NA non-coding downstream 74871 3900971 ~ 3916783 (+)
G187073 NA non-coding downstream 194178 4020278 ~ 4049114 (+)
G187078 kcnab2,LOC108431628,LOC105017255,LOC108255041,LOC106565914,LOC106582955 non-coding downstream 210414 4036514 ~ 4043886 (+)
G187197 NA non-coding downstream 373703 4199803 ~ 4200058 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 428416 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 821244 2980497 ~ 3002015 (+)
podxl2 NA other upstream 2727922 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 3285043 510575 ~ 538216 (+)
G186231 NA other upstream 3708172 107396 ~ 115087 (+)
p3h1 NA other downstream 1953791 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 3251065 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 3366054 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 4285903 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 4430696 8256796 ~ 8271712 (+)

Expression


Co-expression Network