LOC111195355


Basic Information

Item Value
gene id LOC111195355
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 3757455 ~ 3758688 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682256.1
GGAGAGTCAGCCAGTGCAGATCAGACTCACTCTACACAGAGAGATCTACAGCACTGAGATCTACAGCCATGACTCCTGCAATCACTTCAGCACCTTCCATCTCAAAGGAGCTCCTCCCTCTCAACAACAAGCTGAGAAAGCCAGTGGTGGAGAAGATGCGCAGAGATCGCATCAACAGCAGCATTGAGCAGCTCAAGACTCTCCTGACTCCAGAGTTCCTCAACCAGCAGCCCGACTCCAAGCTGGAGAAAGCAGATATCCTGGAGATGACAGTCAGCTTCCTCAgacgacagcagcagcagcagcagcagcagcagcctgcatTCTCCTCCAGCTCAGCAGCTGTCAATCAAGGCTTCTCCAGATGTGTCCATGAGCTTCTGCACTTCCTGTCCAAAGATGAGGTGAAGACACAGTCTCAGAGAAAACTGATGAACCACGTCCTGCAGAACCTGCAGCCGTCAGCAGATCAGAAATGGAGGGAAAGTGTTCTCCCTCAAGAGCAGCAGAACATCATCAGCAAAGAGAAGAGCGCCCTCTGGAGGCCCTGGTAGATTCCTTCAGAATCAGATGAACTACAAAAGCAGAACAGAAGGGACTACAAATGTCTAGATTAGATGTTTGTGGTgaagttttgtatttattgctttGTATCAAAGACTGTTTTAAAGCTTGTTTCTCTTGTGGGGAAATTTgcgttcttatttattttttaattctctgGAAGTTTTGGTAGAAATAATTATTAGGAGGCAAAATACTGAACGTCTTCtgatcaaaacattttaaaagtctattttctatATTAGAGATTTTACACATCCTCTATGAGTTTCTATACAAATGTTTTAGTTAAACCTGATCTGTAATTCATCAGGTTGAAttatataatgaaataattattaGGAGACAAAATACTGAACGTCTTCtgatcaaaacattttaaaagtctaTGTTAGACTTTTGCTTTGctgttatttttacagtttattttccCTGTGGAGAATTATGGGTTTTTATTGATGAAAATTTGTTCAGCTTTAATGAGAATTTCATGTGAATCACATGTGAACTACTGATAACTGCCTACAGCAGATCCTAATTTACCTTCTAAGAA

Function

GO: NA

KEGG:

id description
K06055 HES5; hairy and enhancer of split 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682256.1 True 1117 mRNA 0.41 2 3757455 3758688

Neighbor

gene id symbol gene type direction distance location
LOC103034153 NA coding upstream 4969 3747979 ~ 3752486 (+)
LOC103034692 NA coding upstream 16437 3739123 ~ 3741018 (+)
abhd6 abhd6,abhd6a,LOC107657977,LOC105904082 coding upstream 33380 3708892 ~ 3724075 (+)
LOC107197672 NA coding upstream 59154 3694335 ~ 3698301 (+)
flnb flnb,LOC107657976,LOC107712990 coding upstream 66256 3562169 ~ 3691199 (+)
LOC103027507 NA coding downstream 24252 3782940 ~ 3784341 (+)
LOC103033843 LOC108431592 coding downstream 29541 3788229 ~ 3789355 (+)
LOC103027213 NA coding downstream 45018 3803706 ~ 3805315 (+)
mrto4 mrto4,LOC107701993,LOC107706552,LOC107657981,LOC107712985 coding downstream 126149 3884837 ~ 3891067 (+)
LOC111195456 NA coding downstream 164764 3923452 ~ 3923662 (+)
G187031 NA non-coding upstream 20678 3733953 ~ 3736777 (+)
G187030 NA non-coding upstream 25595 3731592 ~ 3731860 (+)
G187015 NA non-coding upstream 78123 3664240 ~ 3679332 (+)
G186984 dennd6a,LOC107680547,LOC102794572,LOC107657973 non-coding upstream 300564 3449388 ~ 3456891 (+)
G186968 NA non-coding upstream 356030 3354711 ~ 3401425 (+)
G187033 NA non-coding downstream 2326 3761014 ~ 3774562 (+)
G187050 aldh4a1 non-coding downstream 53659 3812347 ~ 3814756 (+)
G187053 aldh4a1,LOC106582961,LOC107712945 non-coding downstream 59685 3818373 ~ 3821891 (+)
G187047 NA non-coding downstream 64571 3823259 ~ 3826100 (+)
G187059 NA non-coding downstream 127961 3886649 ~ 3957459 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 362612 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 755440 2980497 ~ 3002015 (+)
podxl2 NA other upstream 2662118 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 3219239 510575 ~ 538216 (+)
G186231 NA other upstream 3642368 107396 ~ 115087 (+)
p3h1 NA other downstream 2021203 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 3318477 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 3433466 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 4353315 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 4498108 8256796 ~ 8271712 (+)

Expression


Co-expression Network