G188838


Basic Information

Item Value
gene id G188838
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 10699614 ~ 10699880 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU255974
ATTTAGCGCAATCTGTAGAGCATTAAAAGAGTTCTGTAGTTTTATTACTGCAGCATGTATAGAATCAGCTGAGCAATATAAGATTGTGTCATCTGCATAAAGgtGTATTTTGCAATCTAAGGAAGAAACAGAGGCAGCAATATcattaatgtatatattaaataaaactggacccAGAATGGAACCTTGGGGGACGCCCTTAGAAATAGCTAGGAAATCTGATTTATAattattgaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255974 True 238 lncRNA 0.34 2 10699614 10699880

Neighbor

gene id symbol gene type direction distance location
lrrc38 lrrc38,LOC108439497,LOC107685631,LOC108281009,LOC107691331,LOC107555684,LOC107568719 coding downstream 415700 10224975 ~ 10283914 (-)
LOC111195372 LOC108410896,LOC108414677,LOC108416243 coding downstream 596721 10094323 ~ 10102893 (-)
aadacl4 NA coding downstream 677937 9999315 ~ 10021677 (-)
LOC103046340 NA coding downstream 703149 9975733 ~ 9996465 (-)
LOC103033950 NA coding downstream 771193 9902960 ~ 9928421 (-)
LOC111195430 gria2,LOC108411138 coding upstream 134136 10834016 ~ 10859898 (-)
lrig1 lrig1,LOC107716980,LOC107557776 coding upstream 380243 11080123 ~ 11155745 (-)
suclg2 suclg2,LOC107729402,LOC107753779,LOC107699794 coding upstream 672377 11372257 ~ 11534415 (-)
fam19a4 fam19a4,fam19a4b,LOC107655986,LOC107600333,LOC107729393,LOC107696804,LOC107558879 coding upstream 1357652 12057532 ~ 12115859 (-)
tmf1 tmf1 coding upstream 1482239 12182119 ~ 12207582 (-)
G188649 NA non-coding downstream 366322 10333047 ~ 10333292 (-)
G188644 NA non-coding downstream 374616 10324521 ~ 10324998 (-)
G188640 NA non-coding downstream 375931 10323482 ~ 10323683 (-)
G188633 NA non-coding downstream 384042 10315341 ~ 10315572 (-)
G188631 NA non-coding downstream 396934 10302366 ~ 10302680 (-)
G188900 NA non-coding upstream 293215 10993095 ~ 10993340 (-)
G188936 NA non-coding upstream 376698 11076578 ~ 11076888 (-)
G188930 NA non-coding upstream 377370 11077250 ~ 11078201 (-)
G188929 NA non-coding upstream 378577 11078457 ~ 11078571 (-)
G188939 NA non-coding upstream 456020 11155900 ~ 11156311 (-)
LOC111195437 NA other downstream 743297 9951084 ~ 9956317 (-)
ghrh ghrh,LOC103034597,LOC108438619 other downstream 3279808 7409122 ~ 7419806 (-)
G187946 mybl2,mybl2b other downstream 3308588 7388397 ~ 7391026 (-)
pdrg1 pdrg1 other downstream 3506362 7188616 ~ 7193252 (-)
LOC111195363 snrpe other downstream 3716774 6977651 ~ 6982840 (-)
G188898 NA other upstream 290937 10990817 ~ 10991394 (-)
G189055 NA other upstream 1344033 12043913 ~ 12044293 (-)
eogt eogt,LOC107729408 other upstream 1460662 12160542 ~ 12178610 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other upstream 1598169 12298049 ~ 12395532 (-)
LOC111195455 NA other upstream 1912731 12612611 ~ 12714032 (-)

Expression


Co-expression Network