G189419


Basic Information

Item Value
gene id G189419
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 13210788 ~ 13211185 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256765
GTAAACTTATTTTCCATCTGTTAACCTgagtctaaaaacatttggctgatgTTAGAATTTTAATGTGTGTGGAGTTGTGTCCACAAGCTGTTGTAGGGATGGTCCACCTAAGTTTAGACTAACTAGTTCCTATGACAGTGATTTTGAAGCTATGAGCTGCAGTGGTCCTGTTAGAAGTCATTGgcctaatatttattttccttgttcagttccaatatatatttttgcgaaCTGTGCTACCTGTAAattaataagtttcACTTGTTTGGCATAGTTGCAAGACTGTTAGCTGGTGGTTTAGCAAgctagttattatatatatatatatatatatagaattaatttagcattaatattaatgcacatataAGAGAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256765 True 377 lncRNA 0.33 2 13210788 13211185

Neighbor

gene id symbol gene type direction distance location
pparg pparg coding downstream 78692 13085029 ~ 13132096 (-)
mkrn2 mkrn2 coding downstream 163242 13033576 ~ 13047546 (-)
LOC103027392 cnbp,cnbpb,LOC106583855,LOC107742030,LOC108431552,LOC106566283,LOC108254964,LOC107742027,LOC107675970 coding downstream 212178 12994479 ~ 12998610 (-)
LOC111195380 NA coding downstream 220520 12983421 ~ 12990268 (-)
LOC103027102 isy1,LOC108431508,LOC108254962,LOC107700632 coding downstream 229971 12973940 ~ 12980817 (-)
LOC103033524 mmp19,LOC103033524,LOC108431507,LOC107737372,LOC107683650 coding upstream 173740 13384925 ~ 13395895 (-)
LOC111195441 LOC106570611,LOC106595375,LOC106565963 coding upstream 248550 13459735 ~ 13465405 (-)
gdf11 gdf11,LOC108431504,LOC107385665,LOC101480554,LOC103359380 coding upstream 282391 13493576 ~ 13533622 (-)
LOC103026383 NA coding upstream 345837 13557022 ~ 13572611 (-)
LOC111195442 NA coding upstream 1040279 14251464 ~ 14255472 (-)
G189418 NA non-coding downstream 568 13207040 ~ 13210220 (-)
G189417 timp4 non-coding downstream 15981 13189778 ~ 13194807 (-)
G189404 NA non-coding downstream 157055 13050559 ~ 13053733 (-)
G189402 NA non-coding downstream 178548 13030170 ~ 13032240 (-)
G189385 NA non-coding downstream 307628 12902937 ~ 12903160 (-)
G189422 NA non-coding upstream 32396 13243581 ~ 13243984 (-)
G189448 NA non-coding upstream 104524 13315709 ~ 13315945 (-)
G189455 timeless non-coding upstream 122275 13333460 ~ 13334910 (-)
G189490 NA non-coding upstream 237056 13448241 ~ 13448525 (-)
G189494 cdk2,LOC107570445,LOC107683630,LOC107562245 non-coding upstream 240969 13452154 ~ 13456427 (-)
tsen2 NA other downstream 134046 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 496756 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 591222 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 815256 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 1032178 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 2107458 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 2198022 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 3134516 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 3358438 16569623 ~ 16599317 (-)
cass4 NA other upstream 3622665 16833850 ~ 16869461 (-)

Expression


Co-expression Network