G189490


Basic Information

Item Value
gene id G189490
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 13448241 ~ 13448525 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256863
gtccaggtgaggttatctgctaagtggacaccaaggaacttggtgctcttaacaatctccacagaggacccgtcgatgttgagtggagagtgggtgtgttgtgctctcctgaagtcaacaaccatttcctttgtcttgtccacattcaggtgaaggttgttgactgtacaccagtctgtcagccgctgcacctcctctctgtatgctgactcgtagcctttggtgatgagacccagcacggttgtatcatcggcgaacttgataaagctgttagaactgtgtttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256863 True 285 lncRNA 0.49 1 13448241 13448525

Neighbor

gene id symbol gene type direction distance location
LOC103033524 mmp19,LOC103033524,LOC108431507,LOC107737372,LOC107683650 coding downstream 52346 13384925 ~ 13395895 (-)
LOC103031721 syn2,syn2b,LOC107758022 coding downstream 165768 13148196 ~ 13282473 (-)
pparg pparg coding downstream 316145 13085029 ~ 13132096 (-)
mkrn2 mkrn2 coding downstream 400695 13033576 ~ 13047546 (-)
LOC103027392 cnbp,cnbpb,LOC106583855,LOC107742030,LOC108431552,LOC106566283,LOC108254964,LOC107742027,LOC107675970 coding downstream 449631 12994479 ~ 12998610 (-)
LOC111195441 LOC106570611,LOC106595375,LOC106565963 coding upstream 11210 13459735 ~ 13465405 (-)
gdf11 gdf11,LOC108431504,LOC107385665,LOC101480554,LOC103359380 coding upstream 45051 13493576 ~ 13533622 (-)
LOC103026383 NA coding upstream 108497 13557022 ~ 13572611 (-)
LOC111195442 NA coding upstream 802939 14251464 ~ 14255472 (-)
vgll4 vgll4,LOC107697562,LOC107750033 coding upstream 1100621 14549146 ~ 14609624 (-)
G189455 timeless non-coding downstream 113331 13333460 ~ 13334910 (-)
G189448 NA non-coding downstream 132296 13315709 ~ 13315945 (-)
G189422 NA non-coding downstream 204257 13243581 ~ 13243984 (-)
G189419 NA non-coding downstream 237056 13210788 ~ 13211185 (-)
G189418 NA non-coding downstream 238021 13207040 ~ 13210220 (-)
G189494 cdk2,LOC107570445,LOC107683630,LOC107562245 non-coding upstream 3629 13452154 ~ 13456427 (-)
G189509 sarnp non-coding upstream 24100 13472625 ~ 13485558 (-)
G189522 NA non-coding upstream 98005 13546530 ~ 13546899 (-)
G189600 NA non-coding upstream 492661 13941186 ~ 13943399 (-)
G189623 NA non-coding upstream 525130 13973655 ~ 14047697 (-)
tsen2 NA other downstream 371499 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 734209 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 828675 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 1052709 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 1269631 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 1870118 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 1960682 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 2897176 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 3121098 16569623 ~ 16599317 (-)
cass4 NA other upstream 3385325 16833850 ~ 16869461 (-)

Expression


Co-expression Network