G189509 (sarnp)


Basic Information

Item Value
gene id G189509
gene name sarnp
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 13472625 ~ 13485558 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256895
TTGTGAGAAACTTCAATGTTTATTGTACACAACTTAAAATAACCAGACTGACCGCAAATTACATGtcttaaagaattaaaaaaaaaaaaaaaacaacaacaaaagaatacaaaagtaaaaaaagattcaaatttaaaaaaagattcagacaTTTCCAAACCGCTCGGCTCGTTTTCTCTTCTTAGCCTCTGAATCCTCAGCTCCGGCTCCGGCTGCAGCTGCACCCGTCTGAATCCCAAACCTCTCCTTCCTCTTCTTCAGCTTCTCATCCTCCTCAACCTTTTTAGAAACAGAGGAGACGTTCATCCCAAAACGCTCTGCTCTTTTCTTTAAGACCTCCACATCAACATTTGTTTTGGACATGGCAGAGGCTCCTTTAGAGGGGGCAGATGCTGTTGCTGGAATTCCAAACC

Function

symbol description
sarnp Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be active in nucleus. Orthologous to human SARNP (SAP domain containing ribonucleoprotein).

NR:

description
PREDICTED: SAP domain-containing ribonucleoprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256895 True 413 lncRNA 0.40 5 13472625 13485558

Neighbor

gene id symbol gene type direction distance location
LOC111195441 LOC106570611,LOC106595375,LOC106565963 coding downstream 7220 13459735 ~ 13465405 (-)
LOC103033524 mmp19,LOC103033524,LOC108431507,LOC107737372,LOC107683650 coding downstream 76730 13384925 ~ 13395895 (-)
LOC103031721 syn2,syn2b,LOC107758022 coding downstream 190152 13148196 ~ 13282473 (-)
pparg pparg coding downstream 340529 13085029 ~ 13132096 (-)
mkrn2 mkrn2 coding downstream 425079 13033576 ~ 13047546 (-)
gdf11 gdf11,LOC108431504,LOC107385665,LOC101480554,LOC103359380 coding upstream 8018 13493576 ~ 13533622 (-)
LOC103026383 NA coding upstream 71464 13557022 ~ 13572611 (-)
LOC111195442 NA coding upstream 765906 14251464 ~ 14255472 (-)
vgll4 vgll4,LOC107697562,LOC107750033 coding upstream 1063588 14549146 ~ 14609624 (-)
tamm41 tamm41 coding upstream 1125393 14610951 ~ 14621412 (-)
G189494 cdk2,LOC107570445,LOC107683630,LOC107562245 non-coding downstream 16198 13452154 ~ 13456427 (-)
G189490 NA non-coding downstream 24100 13448241 ~ 13448525 (-)
G189455 timeless non-coding downstream 137715 13333460 ~ 13334910 (-)
G189448 NA non-coding downstream 156680 13315709 ~ 13315945 (-)
G189422 NA non-coding downstream 228641 13243581 ~ 13243984 (-)
G189522 NA non-coding upstream 60972 13546530 ~ 13546899 (-)
G189600 NA non-coding upstream 455628 13941186 ~ 13943399 (-)
G189623 NA non-coding upstream 488097 13973655 ~ 14047697 (-)
G189624 NA non-coding upstream 494358 13979916 ~ 14008260 (-)
G189638 NA non-coding upstream 559187 14044745 ~ 14108618 (-)
tsen2 NA other downstream 395883 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 758593 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 853059 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 1077093 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 1294015 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 1833085 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 1923649 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 2860143 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 3084065 16569623 ~ 16599317 (-)
cass4 NA other upstream 3348292 16833850 ~ 16869461 (-)

Expression


Co-expression Network